miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 18010 0.66 0.966886
Target:  5'- -aCGAgGACGGCGuGUuCCAACUguacgugacggCCGCCa -3'
miRNA:   3'- gaGCU-CUGCUGU-CGuGGUUGA-----------GGCGG- -5'
10815 5' -55 NC_002794.1 + 36012 0.66 0.966886
Target:  5'- gCUCG-GGCGGCGGaauccgccguCCGGCccggCCGCCc -3'
miRNA:   3'- -GAGCuCUGCUGUCgu--------GGUUGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 44174 0.67 0.952881
Target:  5'- -gCGAG-CGGCGGCucgUCGACUCCGg- -3'
miRNA:   3'- gaGCUCuGCUGUCGu--GGUUGAGGCgg -5'
10815 5' -55 NC_002794.1 + 183123 0.67 0.948839
Target:  5'- uUCGGcGGCGGCucccGUACgcgCAGCUCCGCg -3'
miRNA:   3'- gAGCU-CUGCUGu---CGUG---GUUGAGGCGg -5'
10815 5' -55 NC_002794.1 + 21368 0.67 0.948839
Target:  5'- --aGAGACG-CGGCGgCGGCcgCCGUCu -3'
miRNA:   3'- gagCUCUGCuGUCGUgGUUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 89961 0.67 0.948839
Target:  5'- gUCGAGGCGuucggaccguGguGCGCCGGCgUUCGaCCg -3'
miRNA:   3'- gAGCUCUGC----------UguCGUGGUUG-AGGC-GG- -5'
10815 5' -55 NC_002794.1 + 145832 0.67 0.948839
Target:  5'- -cCGAGcgcguCGACGGuCGCCAcgcucgACgagCCGCCg -3'
miRNA:   3'- gaGCUCu----GCUGUC-GUGGU------UGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 111412 0.67 0.948839
Target:  5'- gUCGAGACcguaGGCGCgGAg-CCGCCa -3'
miRNA:   3'- gAGCUCUGcug-UCGUGgUUgaGGCGG- -5'
10815 5' -55 NC_002794.1 + 16775 0.67 0.948839
Target:  5'- -aCGA-ACGGCAcGCGCCGACgccaaaUCGCCg -3'
miRNA:   3'- gaGCUcUGCUGU-CGUGGUUGa-----GGCGG- -5'
10815 5' -55 NC_002794.1 + 19521 0.67 0.948839
Target:  5'- gCUCGGaGCGcCGGCGCggcgCGGC-CCGCCg -3'
miRNA:   3'- -GAGCUcUGCuGUCGUG----GUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 24413 0.67 0.952881
Target:  5'- uCUCGAGA-GACAcCGCCGauGCUCggggCGCCc -3'
miRNA:   3'- -GAGCUCUgCUGUcGUGGU--UGAG----GCGG- -5'
10815 5' -55 NC_002794.1 + 114047 0.67 0.952881
Target:  5'- -cCGuAGuCGcCGcGCACCAGCUCCGUg -3'
miRNA:   3'- gaGC-UCuGCuGU-CGUGGUUGAGGCGg -5'
10815 5' -55 NC_002794.1 + 34050 0.67 0.952881
Target:  5'- -cCGGGcCGGCccGCGCaCGAC-CCGCCg -3'
miRNA:   3'- gaGCUCuGCUGu-CGUG-GUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 93838 0.67 0.952881
Target:  5'- aUCGccgagaucauGGACGGCcGCGgCGGCgagCCGCCc -3'
miRNA:   3'- gAGC----------UCUGCUGuCGUgGUUGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 101420 0.67 0.952881
Target:  5'- aCUCGAcguggcugcgcGACGAUccggGGaCGCCGGCgcgcCCGCCc -3'
miRNA:   3'- -GAGCU-----------CUGCUG----UC-GUGGUUGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 141423 0.67 0.952881
Target:  5'- cCUCgGGGGCGGCgggGGCGCCGGgggCGCCg -3'
miRNA:   3'- -GAG-CUCUGCUG---UCGUGGUUgagGCGG- -5'
10815 5' -55 NC_002794.1 + 193144 0.67 0.952881
Target:  5'- cCUCGuGcccguacaGCGccuccaGCAGCACCAGC-CCGCg -3'
miRNA:   3'- -GAGCuC--------UGC------UGUCGUGGUUGaGGCGg -5'
10815 5' -55 NC_002794.1 + 119501 0.67 0.952881
Target:  5'- cCUCGGGGucguCGGCGGCGCgGAg-CCgGCCg -3'
miRNA:   3'- -GAGCUCU----GCUGUCGUGgUUgaGG-CGG- -5'
10815 5' -55 NC_002794.1 + 106942 0.67 0.952881
Target:  5'- -gCGGGcCGGCGGCGCCuggagacACgcgUCGCCu -3'
miRNA:   3'- gaGCUCuGCUGUCGUGGu------UGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 82038 0.67 0.948839
Target:  5'- aUCGcguGGGCGGCGGCGgCGGCggCGUCg -3'
miRNA:   3'- gAGC---UCUGCUGUCGUgGUUGagGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.