Results 101 - 120 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10815 | 5' | -55 | NC_002794.1 | + | 83876 | 0.67 | 0.944572 |
Target: 5'- gUCGGcGCGACGGCcCCGgGCUCggCGCCc -3' miRNA: 3'- gAGCUcUGCUGUCGuGGU-UGAG--GCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 50734 | 0.67 | 0.948422 |
Target: 5'- -cCGGGGCGGCcGCcUCGACucgcucgUCCGCCc -3' miRNA: 3'- gaGCUCUGCUGuCGuGGUUG-------AGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 82038 | 0.67 | 0.948839 |
Target: 5'- aUCGcguGGGCGGCGGCGgCGGCggCGUCg -3' miRNA: 3'- gAGC---UCUGCUGUCGUgGUUGagGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 34050 | 0.67 | 0.952881 |
Target: 5'- -cCGGGcCGGCccGCGCaCGAC-CCGCCg -3' miRNA: 3'- gaGCUCuGCUGu-CGUG-GUUGaGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 93838 | 0.67 | 0.952881 |
Target: 5'- aUCGccgagaucauGGACGGCcGCGgCGGCgagCCGCCc -3' miRNA: 3'- gAGC----------UCUGCUGuCGUgGUUGa--GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 101420 | 0.67 | 0.952881 |
Target: 5'- aCUCGAcguggcugcgcGACGAUccggGGaCGCCGGCgcgcCCGCCc -3' miRNA: 3'- -GAGCU-----------CUGCUG----UC-GUGGUUGa---GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 141423 | 0.67 | 0.952881 |
Target: 5'- cCUCgGGGGCGGCgggGGCGCCGGgggCGCCg -3' miRNA: 3'- -GAG-CUCUGCUG---UCGUGGUUgagGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 193144 | 0.67 | 0.952881 |
Target: 5'- cCUCGuGcccguacaGCGccuccaGCAGCACCAGC-CCGCg -3' miRNA: 3'- -GAGCuC--------UGC------UGUCGUGGUUGaGGCGg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 119501 | 0.67 | 0.952881 |
Target: 5'- cCUCGGGGucguCGGCGGCGCgGAg-CCgGCCg -3' miRNA: 3'- -GAGCUCU----GCUGUCGUGgUUgaGG-CGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 106942 | 0.67 | 0.952881 |
Target: 5'- -gCGGGcCGGCGGCGCCuggagacACgcgUCGCCu -3' miRNA: 3'- gaGCUCuGCUGUCGUGGu------UGa--GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 114047 | 0.67 | 0.952881 |
Target: 5'- -cCGuAGuCGcCGcGCACCAGCUCCGUg -3' miRNA: 3'- gaGC-UCuGCuGU-CGUGGUUGAGGCGg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 24413 | 0.67 | 0.952881 |
Target: 5'- uCUCGAGA-GACAcCGCCGauGCUCggggCGCCc -3' miRNA: 3'- -GAGCUCUgCUGUcGUGGU--UGAG----GCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 44174 | 0.67 | 0.952881 |
Target: 5'- -gCGAG-CGGCGGCucgUCGACUCCGg- -3' miRNA: 3'- gaGCUCuGCUGUCGu--GGUUGAGGCgg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 183123 | 0.67 | 0.948839 |
Target: 5'- uUCGGcGGCGGCucccGUACgcgCAGCUCCGCg -3' miRNA: 3'- gAGCU-CUGCUGu---CGUG---GUUGAGGCGg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 21368 | 0.67 | 0.948839 |
Target: 5'- --aGAGACG-CGGCGgCGGCcgCCGUCu -3' miRNA: 3'- gagCUCUGCuGUCGUgGUUGa-GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 89961 | 0.67 | 0.948839 |
Target: 5'- gUCGAGGCGuucggaccguGguGCGCCGGCgUUCGaCCg -3' miRNA: 3'- gAGCUCUGC----------UguCGUGGUUG-AGGC-GG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 145832 | 0.67 | 0.948839 |
Target: 5'- -cCGAGcgcguCGACGGuCGCCAcgcucgACgagCCGCCg -3' miRNA: 3'- gaGCUCu----GCUGUC-GUGGU------UGa--GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 111412 | 0.67 | 0.948839 |
Target: 5'- gUCGAGACcguaGGCGCgGAg-CCGCCa -3' miRNA: 3'- gAGCUCUGcug-UCGUGgUUgaGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 16775 | 0.67 | 0.948839 |
Target: 5'- -aCGA-ACGGCAcGCGCCGACgccaaaUCGCCg -3' miRNA: 3'- gaGCUcUGCUGU-CGUGGUUGa-----GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 19521 | 0.67 | 0.948839 |
Target: 5'- gCUCGGaGCGcCGGCGCggcgCGGC-CCGCCg -3' miRNA: 3'- -GAGCUcUGCuGUCGUG----GUUGaGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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