miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 65305 1.12 0.003393
Target:  5'- cCUCGAGACGACAGCACCAACUCCGCCu -3'
miRNA:   3'- -GAGCUCUGCUGUCGUGGUUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 63699 0.85 0.176031
Target:  5'- -aUGAcGACGACGGCGCCGGCgCCGCCg -3'
miRNA:   3'- gaGCU-CUGCUGUCGUGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 42237 0.83 0.230088
Target:  5'- -gCGAGACGGCGGCgacgaacuccgaGCCcGCUCCGCCc -3'
miRNA:   3'- gaGCUCUGCUGUCG------------UGGuUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 32653 0.82 0.265116
Target:  5'- -cCGGGGCGACGGCGCCGuccccguCgUCCGCCa -3'
miRNA:   3'- gaGCUCUGCUGUCGUGGUu------G-AGGCGG- -5'
10815 5' -55 NC_002794.1 + 182954 0.81 0.297506
Target:  5'- gCUCGAGcCGACGGCgGCCGGCUCCucguucgaGCCg -3'
miRNA:   3'- -GAGCUCuGCUGUCG-UGGUUGAGG--------CGG- -5'
10815 5' -55 NC_002794.1 + 61509 0.8 0.332884
Target:  5'- cCUCGcccgccGGACGGCGGcCGCCGGCggCCGCCg -3'
miRNA:   3'- -GAGC------UCUGCUGUC-GUGGUUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 118268 0.79 0.379279
Target:  5'- -cCGGGGCGGCGGCGCCGGCgucggggaCCGCg -3'
miRNA:   3'- gaGCUCUGCUGUCGUGGUUGa-------GGCGg -5'
10815 5' -55 NC_002794.1 + 55185 0.78 0.438615
Target:  5'- aCUCGAGGCGGCGGCcCUAACaCCGgCg -3'
miRNA:   3'- -GAGCUCUGCUGUCGuGGUUGaGGCgG- -5'
10815 5' -55 NC_002794.1 + 186340 0.78 0.421117
Target:  5'- aUCGAcGGCGGCGGCgacgugcccgACCAGCcgCCGCCg -3'
miRNA:   3'- gAGCU-CUGCUGUCG----------UGGUUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 67012 0.78 0.412528
Target:  5'- -aCGAGuccgGCGGCGGCgGCCGGCUCcCGCCg -3'
miRNA:   3'- gaGCUC----UGCUGUCG-UGGUUGAG-GCGG- -5'
10815 5' -55 NC_002794.1 + 150588 0.78 0.447518
Target:  5'- cCUCGggcgcccgaGGACGGCcgGGCGCCGGCUCUGCg -3'
miRNA:   3'- -GAGC---------UCUGCUG--UCGUGGUUGAGGCGg -5'
10815 5' -55 NC_002794.1 + 115924 0.76 0.541451
Target:  5'- aCUUGGcGCGGCGGCggGCCGGC-CCGCCg -3'
miRNA:   3'- -GAGCUcUGCUGUCG--UGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 62493 0.76 0.502914
Target:  5'- -gCGAGugGACGGCgggcggcgccGCCGGCgccUCCGCCc -3'
miRNA:   3'- gaGCUCugCUGUCG----------UGGUUG---AGGCGG- -5'
10815 5' -55 NC_002794.1 + 186973 0.76 0.531716
Target:  5'- cCUCcAGcaGCG-CGcGCACCAGCUCCGCCg -3'
miRNA:   3'- -GAGcUC--UGCuGU-CGUGGUUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 93990 0.76 0.506716
Target:  5'- gCUCGgcgcGGACGcCGGCGCCGGCggcgggccggcggguUCCGCCg -3'
miRNA:   3'- -GAGC----UCUGCuGUCGUGGUUG---------------AGGCGG- -5'
10815 5' -55 NC_002794.1 + 84149 0.76 0.502914
Target:  5'- -aCGAGcGCGACGGCGCCuccuCUCgGCCc -3'
miRNA:   3'- gaGCUC-UGCUGUCGUGGuu--GAGgCGG- -5'
10815 5' -55 NC_002794.1 + 118173 0.76 0.531716
Target:  5'- gUCGuAGGCGGCGacGCGCCGACcuUCCGUCg -3'
miRNA:   3'- gAGC-UCUGCUGU--CGUGGUUG--AGGCGG- -5'
10815 5' -55 NC_002794.1 + 50329 0.76 0.541451
Target:  5'- uCUCGucGAUGuugggcuCGGuCACCGGCUCCGCCa -3'
miRNA:   3'- -GAGCu-CUGCu------GUC-GUGGUUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 66420 0.75 0.600894
Target:  5'- -gCGaAGACGGCGGUugCGACcgucguuucugUCCGCCg -3'
miRNA:   3'- gaGC-UCUGCUGUCGugGUUG-----------AGGCGG- -5'
10815 5' -55 NC_002794.1 + 145732 0.75 0.600894
Target:  5'- gCUgGAGGCGGCGGCGCCGGCaUCGaCg -3'
miRNA:   3'- -GAgCUCUGCUGUCGUGGUUGaGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.