miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 145732 0.75 0.600894
Target:  5'- gCUgGAGGCGGCGGCGCCGGCaUCGaCg -3'
miRNA:   3'- -GAgCUCUGCUGUCGUGGUUGaGGCgG- -5'
10815 5' -55 NC_002794.1 + 121474 0.75 0.561091
Target:  5'- gUCGAGACGAC--CGCCGGuucggacgcggcCUCCGCCg -3'
miRNA:   3'- gAGCUCUGCUGucGUGGUU------------GAGGCGG- -5'
10815 5' -55 NC_002794.1 + 49604 0.75 0.561091
Target:  5'- aUCGGcGACGGCgGGCGCCGGCggCGCCu -3'
miRNA:   3'- gAGCU-CUGCUG-UCGUGGUUGagGCGG- -5'
10815 5' -55 NC_002794.1 + 14187 0.74 0.641049
Target:  5'- -cCGAGACGuCAGCGucCCGGC-CCGCUg -3'
miRNA:   3'- gaGCUCUGCuGUCGU--GGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 68816 0.74 0.661115
Target:  5'- aCUCGAGACaGACGGCG---ACgCCGCCg -3'
miRNA:   3'- -GAGCUCUG-CUGUCGUgguUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 185249 0.74 0.641049
Target:  5'- -aCGAGA-GAaAGCGCCAGCggacgCCGCCg -3'
miRNA:   3'- gaGCUCUgCUgUCGUGGUUGa----GGCGG- -5'
10815 5' -55 NC_002794.1 + 64772 0.74 0.631001
Target:  5'- uUCGGGACGACGaagacGaCGCCggUUCCGCg -3'
miRNA:   3'- gAGCUCUGCUGU-----C-GUGGuuGAGGCGg -5'
10815 5' -55 NC_002794.1 + 176438 0.74 0.641049
Target:  5'- -cCGAGACGACGGUgACUugUUCCGUCg -3'
miRNA:   3'- gaGCUCUGCUGUCG-UGGuuGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 48156 0.74 0.631001
Target:  5'- -aCGAGGCaGCGGCGCCGcUUCaCGCCg -3'
miRNA:   3'- gaGCUCUGcUGUCGUGGUuGAG-GCGG- -5'
10815 5' -55 NC_002794.1 + 105907 0.74 0.641049
Target:  5'- -cCGcGGCGGCGGCGCUAccGCcgCCGCCg -3'
miRNA:   3'- gaGCuCUGCUGUCGUGGU--UGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 63802 0.74 0.620955
Target:  5'- -cCGcGACGACGucccGCACCGACUUCGCg -3'
miRNA:   3'- gaGCuCUGCUGU----CGUGGUUGAGGCGg -5'
10815 5' -55 NC_002794.1 + 192274 0.73 0.700912
Target:  5'- uCUCGcGACGACAcGCgacccggagACCAGCUUCGCg -3'
miRNA:   3'- -GAGCuCUGCUGU-CG---------UGGUUGAGGCGg -5'
10815 5' -55 NC_002794.1 + 70870 0.73 0.710743
Target:  5'- -cCGGcGGCGGCAGCGgCGGCUCCucgagcGCCa -3'
miRNA:   3'- gaGCU-CUGCUGUCGUgGUUGAGG------CGG- -5'
10815 5' -55 NC_002794.1 + 54989 0.73 0.710743
Target:  5'- -cCGcGGCGACGGCGgCGACucgccgggcgUCCGCCg -3'
miRNA:   3'- gaGCuCUGCUGUCGUgGUUG----------AGGCGG- -5'
10815 5' -55 NC_002794.1 + 19459 0.73 0.710743
Target:  5'- -aCGAG-CGGCGGCGgCGGCgggacCCGCCg -3'
miRNA:   3'- gaGCUCuGCUGUCGUgGUUGa----GGCGG- -5'
10815 5' -55 NC_002794.1 + 59298 0.73 0.710743
Target:  5'- gCUCGAcGcCGcGCAGCGCCAcggcgcgcccgACUUCGCCg -3'
miRNA:   3'- -GAGCU-CuGC-UGUCGUGGU-----------UGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 75484 0.73 0.709763
Target:  5'- -cCGAGACGGCccgcguacgagccGGCaACCAG-UCCGCCg -3'
miRNA:   3'- gaGCUCUGCUG-------------UCG-UGGUUgAGGCGG- -5'
10815 5' -55 NC_002794.1 + 113089 0.73 0.710743
Target:  5'- cCUCGGcGaACGGCGGCGgCAGCUCCuGCa -3'
miRNA:   3'- -GAGCU-C-UGCUGUCGUgGUUGAGG-CGg -5'
10815 5' -55 NC_002794.1 + 121760 0.73 0.691025
Target:  5'- --gGAGAUGGCGGUGCCcgaGGCgCCGCCg -3'
miRNA:   3'- gagCUCUGCUGUCGUGG---UUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 134413 0.73 0.710743
Target:  5'- cCUCGAGGCGcCGGCGuuGugUCC-CCa -3'
miRNA:   3'- -GAGCUCUGCuGUCGUggUugAGGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.