miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 54989 0.73 0.710743
Target:  5'- -cCGcGGCGACGGCGgCGACucgccgggcgUCCGCCg -3'
miRNA:   3'- gaGCuCUGCUGUCGUgGUUG----------AGGCGG- -5'
10815 5' -55 NC_002794.1 + 53324 0.72 0.724396
Target:  5'- -gCGAGAuCGGCucgaaccgcaccuccGGCGCCcacgucAACUCCGCCg -3'
miRNA:   3'- gaGCUCU-GCUG---------------UCGUGG------UUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 182192 0.72 0.758758
Target:  5'- -aCGGGGCcuCGGCGCCGGCgUCgCGCCa -3'
miRNA:   3'- gaGCUCUGcuGUCGUGGUUG-AG-GCGG- -5'
10815 5' -55 NC_002794.1 + 37879 0.72 0.717587
Target:  5'- uCUCGGGcggcgggggcggugGCGGCGGCAgCGGCU-CGCCg -3'
miRNA:   3'- -GAGCUC--------------UGCUGUCGUgGUUGAgGCGG- -5'
10815 5' -55 NC_002794.1 + 40602 0.72 0.739815
Target:  5'- -cCGAGucguCGcCGGCGuCCGACUCCGCg -3'
miRNA:   3'- gaGCUCu---GCuGUCGU-GGUUGAGGCGg -5'
10815 5' -55 NC_002794.1 + 81540 0.72 0.768072
Target:  5'- gCUCGAGcGCugGACGGCugCcGCcgCCGCCg -3'
miRNA:   3'- -GAGCUC-UG--CUGUCGugGuUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 100289 0.72 0.758758
Target:  5'- -cCGAGcuuCGGCuGGUGCCGcCUCCGCCg -3'
miRNA:   3'- gaGCUCu--GCUG-UCGUGGUuGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 20270 0.72 0.739815
Target:  5'- --aGAGAcCGACGGCgACCGAa-CCGCCg -3'
miRNA:   3'- gagCUCU-GCUGUCG-UGGUUgaGGCGG- -5'
10815 5' -55 NC_002794.1 + 53720 0.72 0.768072
Target:  5'- cCUCgGGGugGACccGCGCCAucGCcggCCGCCg -3'
miRNA:   3'- -GAG-CUCugCUGu-CGUGGU--UGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 121675 0.72 0.768072
Target:  5'- uCUUGGGACGuCAGUcUCGAgucuuCUCCGCCg -3'
miRNA:   3'- -GAGCUCUGCuGUCGuGGUU-----GAGGCGG- -5'
10815 5' -55 NC_002794.1 + 116888 0.72 0.758758
Target:  5'- --gGGGGCGcCGGCGCCGuCUCCGgCg -3'
miRNA:   3'- gagCUCUGCuGUCGUGGUuGAGGCgG- -5'
10815 5' -55 NC_002794.1 + 101594 0.72 0.768072
Target:  5'- -cCGGGGgGGCgGGUGCCGGC-CCGCCg -3'
miRNA:   3'- gaGCUCUgCUG-UCGUGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 48540 0.72 0.720509
Target:  5'- gCUCGGGuCGGCcG-ACC-ACUCCGCCg -3'
miRNA:   3'- -GAGCUCuGCUGuCgUGGuUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 117073 0.72 0.720509
Target:  5'- cCUCGGGuACGGCGGCAgCGGCguguccacuUCgGCCg -3'
miRNA:   3'- -GAGCUC-UGCUGUCGUgGUUG---------AGgCGG- -5'
10815 5' -55 NC_002794.1 + 46317 0.72 0.739815
Target:  5'- -gCGGcGGCGACGGCGCCGucgCCGCg -3'
miRNA:   3'- gaGCU-CUGCUGUCGUGGUugaGGCGg -5'
10815 5' -55 NC_002794.1 + 12207 0.72 0.717587
Target:  5'- gCUCG-GACGugccggcggcgucgGCGGCGCCGGCggCGCCg -3'
miRNA:   3'- -GAGCuCUGC--------------UGUCGUGGUUGagGCGG- -5'
10815 5' -55 NC_002794.1 + 38490 0.72 0.739815
Target:  5'- --gGAGgaagcGCGGCGGCGCCggUcgCCGCCg -3'
miRNA:   3'- gagCUC-----UGCUGUCGUGGuuGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 187365 0.72 0.768072
Target:  5'- -aCGuAGGCG-C-GCAgCAGCUCCGCCg -3'
miRNA:   3'- gaGC-UCUGCuGuCGUgGUUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 37753 0.72 0.730203
Target:  5'- -gCGGcGCGGCGGCGCCGGCgggagCgGCCg -3'
miRNA:   3'- gaGCUcUGCUGUCGUGGUUGa----GgCGG- -5'
10815 5' -55 NC_002794.1 + 8134 0.72 0.768072
Target:  5'- cCUCGGugaccGGCGACGGCACCGcuuCUCCuucucccccggGCCc -3'
miRNA:   3'- -GAGCU-----CUGCUGUCGUGGUu--GAGG-----------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.