Results 61 - 80 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10815 | 5' | -55 | NC_002794.1 | + | 12207 | 0.72 | 0.717587 |
Target: 5'- gCUCG-GACGugccggcggcgucgGCGGCGCCGGCggCGCCg -3' miRNA: 3'- -GAGCuCUGC--------------UGUCGUGGUUGagGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 130581 | 0.72 | 0.739815 |
Target: 5'- uCUCGAGcaaguCGGgCAGCGCUA--UCCGCCg -3' miRNA: 3'- -GAGCUCu----GCU-GUCGUGGUugAGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 142155 | 0.72 | 0.758758 |
Target: 5'- --gGAGGCGGCgguAGCACCGGCagCGUCg -3' miRNA: 3'- gagCUCUGCUG---UCGUGGUUGagGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 187365 | 0.72 | 0.768072 |
Target: 5'- -aCGuAGGCG-C-GCAgCAGCUCCGCCg -3' miRNA: 3'- gaGC-UCUGCuGuCGUgGUUGAGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 101594 | 0.72 | 0.768072 |
Target: 5'- -cCGGGGgGGCgGGUGCCGGC-CCGCCg -3' miRNA: 3'- gaGCUCUgCUG-UCGUGGUUGaGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 37879 | 0.72 | 0.717587 |
Target: 5'- uCUCGGGcggcgggggcggugGCGGCGGCAgCGGCU-CGCCg -3' miRNA: 3'- -GAGCUC--------------UGCUGUCGUgGUUGAgGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 48540 | 0.72 | 0.720509 |
Target: 5'- gCUCGGGuCGGCcG-ACC-ACUCCGCCg -3' miRNA: 3'- -GAGCUCuGCUGuCgUGGuUGAGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 76259 | 0.71 | 0.811866 |
Target: 5'- gUCGAGACGcucuACGGC-CCGcuggaccuccagaGCUUCGCCc -3' miRNA: 3'- gAGCUCUGC----UGUCGuGGU-------------UGAGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 16721 | 0.71 | 0.79528 |
Target: 5'- -cCGAGGaGuCuGCGCCGGCUCCGUCc -3' miRNA: 3'- gaGCUCUgCuGuCGUGGUUGAGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 192632 | 0.71 | 0.804077 |
Target: 5'- gUCG-GGCGGCcGCuCCAGCcgcgCCGCCg -3' miRNA: 3'- gAGCuCUGCUGuCGuGGUUGa---GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 194907 | 0.71 | 0.803204 |
Target: 5'- gCUCGuGcucgccgacagcaGCGGCcGCACCAGCUCCGaCg -3' miRNA: 3'- -GAGCuC-------------UGCUGuCGUGGUUGAGGCgG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 64848 | 0.71 | 0.812723 |
Target: 5'- -aCGGcGCGGCGGCACCucGACgugCCGCUc -3' miRNA: 3'- gaGCUcUGCUGUCGUGG--UUGa--GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 141308 | 0.71 | 0.786342 |
Target: 5'- -gCGccGGCGACGGCACCGGCgUCgGCUc -3' miRNA: 3'- gaGCu-CUGCUGUCGUGGUUG-AGgCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 137481 | 0.71 | 0.77727 |
Target: 5'- cCUCGuAGA--GCAGCGCCAcggucgguucCUCCGCCg -3' miRNA: 3'- -GAGC-UCUgcUGUCGUGGUu---------GAGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 52612 | 0.71 | 0.786342 |
Target: 5'- -cCGAGACGcCcGC-CCGACcgCCGCCg -3' miRNA: 3'- gaGCUCUGCuGuCGuGGUUGa-GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 115200 | 0.71 | 0.786342 |
Target: 5'- gUCGAGcCGGCguAGCGCC---UCCGCCu -3' miRNA: 3'- gAGCUCuGCUG--UCGUGGuugAGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 18656 | 0.71 | 0.79528 |
Target: 5'- -cCGGGACGACcGuCGCCGcuuccucgGCUgCCGCCg -3' miRNA: 3'- gaGCUCUGCUGuC-GUGGU--------UGA-GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 59728 | 0.71 | 0.804077 |
Target: 5'- uUCGAGGcCGACcgccugcucuacAGCACCAAgUCCuCCa -3' miRNA: 3'- gAGCUCU-GCUG------------UCGUGGUUgAGGcGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 75344 | 0.71 | 0.804077 |
Target: 5'- -cCGAagaccGGCGACGGUucgccACCGAC-CCGCCg -3' miRNA: 3'- gaGCU-----CUGCUGUCG-----UGGUUGaGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 79437 | 0.71 | 0.796166 |
Target: 5'- -gCGGcGGCGGCGGCgACCGGCgcggagacgacgacgCCGCCa -3' miRNA: 3'- gaGCU-CUGCUGUCG-UGGUUGa--------------GGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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