Results 81 - 100 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10815 | 5' | -55 | NC_002794.1 | + | 103799 | 0.71 | 0.804077 |
Target: 5'- gCUUGAggugcgccugcGACGGCGGCGCCGACguggagUCGCa -3' miRNA: 3'- -GAGCU-----------CUGCUGUCGUGGUUGa-----GGCGg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 76259 | 0.71 | 0.811866 |
Target: 5'- gUCGAGACGcucuACGGC-CCGcuggaccuccagaGCUUCGCCc -3' miRNA: 3'- gAGCUCUGC----UGUCGuGGU-------------UGAGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 52612 | 0.71 | 0.786342 |
Target: 5'- -cCGAGACGcCcGC-CCGACcgCCGCCg -3' miRNA: 3'- gaGCUCUGCuGuCGuGGUUGa-GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 137481 | 0.71 | 0.77727 |
Target: 5'- cCUCGuAGA--GCAGCGCCAcggucgguucCUCCGCCg -3' miRNA: 3'- -GAGC-UCUgcUGUCGUGGUu---------GAGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 23978 | 0.71 | 0.812723 |
Target: 5'- -gCGAGGC--CGGCGCCAccgucGCUCCGUCc -3' miRNA: 3'- gaGCUCUGcuGUCGUGGU-----UGAGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 53276 | 0.7 | 0.845654 |
Target: 5'- -aCGGGGCGGCgAGCgACC-ACUCCagguGCCg -3' miRNA: 3'- gaGCUCUGCUG-UCG-UGGuUGAGG----CGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 192997 | 0.7 | 0.840894 |
Target: 5'- cCUCGcccGGCGuguGCAGCGCCAGCggcguguacaucugCUGCCg -3' miRNA: 3'- -GAGCu--CUGC---UGUCGUGGUUGa-------------GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 78003 | 0.7 | 0.837684 |
Target: 5'- gUUGuuccGGCGGCGGCGCCGucgggagaacGC-CCGCCg -3' miRNA: 3'- gAGCu---CUGCUGUCGUGGU----------UGaGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 147006 | 0.7 | 0.837684 |
Target: 5'- gUCGGcGGCGGCGGcCGCCGgcGCUCgGUCu -3' miRNA: 3'- gAGCU-CUGCUGUC-GUGGU--UGAGgCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 195266 | 0.7 | 0.836877 |
Target: 5'- -gCGGGgacugcaGCGACAcGCACCGAC-CCGCg -3' miRNA: 3'- gaGCUC-------UGCUGU-CGUGGUUGaGGCGg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 39989 | 0.7 | 0.836877 |
Target: 5'- uUCGAGACGACacguuuauuuuggGGCuGCCGGCUa-GCCu -3' miRNA: 3'- gAGCUCUGCUG-------------UCG-UGGUUGAggCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 69786 | 0.7 | 0.829534 |
Target: 5'- -aCGAGccACGAgAGCGCCGccGCguagcCCGCCg -3' miRNA: 3'- gaGCUC--UGCUgUCGUGGU--UGa----GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 64539 | 0.7 | 0.837684 |
Target: 5'- gCUCGAGGCGuACA--ACCAGC-CCGUCc -3' miRNA: 3'- -GAGCUCUGC-UGUcgUGGUUGaGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 130345 | 0.7 | 0.853437 |
Target: 5'- -gCGGcGACGACGaCGCCGACgacgacggucUCCGCCu -3' miRNA: 3'- gaGCU-CUGCUGUcGUGGUUG----------AGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 78341 | 0.7 | 0.84879 |
Target: 5'- --gGAGGCGccggaaugucggccaGCAGCuCCAacacggccuGCUCCGCCa -3' miRNA: 3'- gagCUCUGC---------------UGUCGuGGU---------UGAGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 93225 | 0.7 | 0.845654 |
Target: 5'- -aCGAGcACGACcuCAUCGACgugCCGCCc -3' miRNA: 3'- gaGCUC-UGCUGucGUGGUUGa--GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 151618 | 0.7 | 0.845654 |
Target: 5'- cCUCGGcuGACGGcCGGCACuUGGCUcgCCGCCg -3' miRNA: 3'- -GAGCU--CUGCU-GUCGUG-GUUGA--GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 48910 | 0.7 | 0.845654 |
Target: 5'- gCUCGGGGCcgcuccGCAGCGCCAgcgccaggcGCUCgGCg -3' miRNA: 3'- -GAGCUCUGc-----UGUCGUGGU---------UGAGgCGg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 102066 | 0.7 | 0.853437 |
Target: 5'- uUCGAGccggGCGACcuGCcgcggGCCGACgagCCGCCg -3' miRNA: 3'- gAGCUC----UGCUGu-CG-----UGGUUGa--GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 144974 | 0.7 | 0.837684 |
Target: 5'- cCUCGAcggugucGCGAcCGGCGCCGgGCgUCCGCCu -3' miRNA: 3'- -GAGCUc------UGCU-GUCGUGGU-UG-AGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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