miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 116888 0.72 0.758758
Target:  5'- --gGGGGCGcCGGCGCCGuCUCCGgCg -3'
miRNA:   3'- gagCUCUGCuGUCGUGGUuGAGGCgG- -5'
10815 5' -55 NC_002794.1 + 121675 0.72 0.768072
Target:  5'- uCUUGGGACGuCAGUcUCGAgucuuCUCCGCCg -3'
miRNA:   3'- -GAGCUCUGCuGUCGuGGUU-----GAGGCGG- -5'
10815 5' -55 NC_002794.1 + 53720 0.72 0.768072
Target:  5'- cCUCgGGGugGACccGCGCCAucGCcggCCGCCg -3'
miRNA:   3'- -GAG-CUCugCUGu-CGUGGU--UGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 8134 0.72 0.768072
Target:  5'- cCUCGGugaccGGCGACGGCACCGcuuCUCCuucucccccggGCCc -3'
miRNA:   3'- -GAGCU-----CUGCUGUCGUGGUu--GAGG-----------CGG- -5'
10815 5' -55 NC_002794.1 + 101594 0.72 0.768072
Target:  5'- -cCGGGGgGGCgGGUGCCGGC-CCGCCg -3'
miRNA:   3'- gaGCUCUgCUG-UCGUGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 81540 0.72 0.768072
Target:  5'- gCUCGAGcGCugGACGGCugCcGCcgCCGCCg -3'
miRNA:   3'- -GAGCUC-UG--CUGUCGugGuUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 187365 0.72 0.768072
Target:  5'- -aCGuAGGCG-C-GCAgCAGCUCCGCCg -3'
miRNA:   3'- gaGC-UCUGCuGuCGUgGUUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 137481 0.71 0.77727
Target:  5'- cCUCGuAGA--GCAGCGCCAcggucgguucCUCCGCCg -3'
miRNA:   3'- -GAGC-UCUgcUGUCGUGGUu---------GAGGCGG- -5'
10815 5' -55 NC_002794.1 + 52612 0.71 0.786342
Target:  5'- -cCGAGACGcCcGC-CCGACcgCCGCCg -3'
miRNA:   3'- gaGCUCUGCuGuCGuGGUUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 141308 0.71 0.786342
Target:  5'- -gCGccGGCGACGGCACCGGCgUCgGCUc -3'
miRNA:   3'- gaGCu-CUGCUGUCGUGGUUG-AGgCGG- -5'
10815 5' -55 NC_002794.1 + 115200 0.71 0.786342
Target:  5'- gUCGAGcCGGCguAGCGCC---UCCGCCu -3'
miRNA:   3'- gAGCUCuGCUG--UCGUGGuugAGGCGG- -5'
10815 5' -55 NC_002794.1 + 18656 0.71 0.79528
Target:  5'- -cCGGGACGACcGuCGCCGcuuccucgGCUgCCGCCg -3'
miRNA:   3'- gaGCUCUGCUGuC-GUGGU--------UGA-GGCGG- -5'
10815 5' -55 NC_002794.1 + 16721 0.71 0.79528
Target:  5'- -cCGAGGaGuCuGCGCCGGCUCCGUCc -3'
miRNA:   3'- gaGCUCUgCuGuCGUGGUUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 79437 0.71 0.796166
Target:  5'- -gCGGcGGCGGCGGCgACCGGCgcggagacgacgacgCCGCCa -3'
miRNA:   3'- gaGCU-CUGCUGUCG-UGGUUGa--------------GGCGG- -5'
10815 5' -55 NC_002794.1 + 194907 0.71 0.803204
Target:  5'- gCUCGuGcucgccgacagcaGCGGCcGCACCAGCUCCGaCg -3'
miRNA:   3'- -GAGCuC-------------UGCUGuCGUGGUUGAGGCgG- -5'
10815 5' -55 NC_002794.1 + 48453 0.71 0.803204
Target:  5'- aUCGGGAC-ACAGcCGCCAcgucaggGCgaagCCGCCg -3'
miRNA:   3'- gAGCUCUGcUGUC-GUGGU-------UGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 192632 0.71 0.804077
Target:  5'- gUCG-GGCGGCcGCuCCAGCcgcgCCGCCg -3'
miRNA:   3'- gAGCuCUGCUGuCGuGGUUGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 46185 0.71 0.804077
Target:  5'- -cCGAGACccCGGCACCGcgcucGCUcgCCGCCg -3'
miRNA:   3'- gaGCUCUGcuGUCGUGGU-----UGA--GGCGG- -5'
10815 5' -55 NC_002794.1 + 75344 0.71 0.804077
Target:  5'- -cCGAagaccGGCGACGGUucgccACCGAC-CCGCCg -3'
miRNA:   3'- gaGCU-----CUGCUGUCG-----UGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 59728 0.71 0.804077
Target:  5'- uUCGAGGcCGACcgccugcucuacAGCACCAAgUCCuCCa -3'
miRNA:   3'- gAGCUCU-GCUG------------UCGUGGUUgAGGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.