miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 75344 0.71 0.804077
Target:  5'- -cCGAagaccGGCGACGGUucgccACCGAC-CCGCCg -3'
miRNA:   3'- gaGCU-----CUGCUGUCG-----UGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 76259 0.71 0.811866
Target:  5'- gUCGAGACGcucuACGGC-CCGcuggaccuccagaGCUUCGCCc -3'
miRNA:   3'- gAGCUCUGC----UGUCGuGGU-------------UGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 64848 0.71 0.812723
Target:  5'- -aCGGcGCGGCGGCACCucGACgugCCGCUc -3'
miRNA:   3'- gaGCUcUGCUGUCGUGG--UUGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 23978 0.71 0.812723
Target:  5'- -gCGAGGC--CGGCGCCAccgucGCUCCGUCc -3'
miRNA:   3'- gaGCUCUGcuGUCGUGGU-----UGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 127348 0.71 0.812723
Target:  5'- -cCGAGACGcucGCGGCGgCGGCgcggCCGCUc -3'
miRNA:   3'- gaGCUCUGC---UGUCGUgGUUGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 20542 0.7 0.821212
Target:  5'- uUCGcGACGACGGgcgaccggauccCGCCGucGCUCCGCa -3'
miRNA:   3'- gAGCuCUGCUGUC------------GUGGU--UGAGGCGg -5'
10815 5' -55 NC_002794.1 + 18703 0.7 0.829534
Target:  5'- -aCGGcGGCGGCGGUccggacgucggaGCCGACgagCCGCCc -3'
miRNA:   3'- gaGCU-CUGCUGUCG------------UGGUUGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 49217 0.7 0.829534
Target:  5'- uUCGAGGCGccGCGcCGCCAACagggCCGUCg -3'
miRNA:   3'- gAGCUCUGC--UGUcGUGGUUGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 22902 0.7 0.829534
Target:  5'- gUUG-GugGACGGCGgCGACcgcggCCGCCa -3'
miRNA:   3'- gAGCuCugCUGUCGUgGUUGa----GGCGG- -5'
10815 5' -55 NC_002794.1 + 69786 0.7 0.829534
Target:  5'- -aCGAGccACGAgAGCGCCGccGCguagcCCGCCg -3'
miRNA:   3'- gaGCUC--UGCUgUCGUGGU--UGa----GGCGG- -5'
10815 5' -55 NC_002794.1 + 39989 0.7 0.836877
Target:  5'- uUCGAGACGACacguuuauuuuggGGCuGCCGGCUa-GCCu -3'
miRNA:   3'- gAGCUCUGCUG-------------UCG-UGGUUGAggCGG- -5'
10815 5' -55 NC_002794.1 + 195266 0.7 0.836877
Target:  5'- -gCGGGgacugcaGCGACAcGCACCGAC-CCGCg -3'
miRNA:   3'- gaGCUC-------UGCUGU-CGUGGUUGaGGCGg -5'
10815 5' -55 NC_002794.1 + 144974 0.7 0.837684
Target:  5'- cCUCGAcggugucGCGAcCGGCGCCGgGCgUCCGCCu -3'
miRNA:   3'- -GAGCUc------UGCU-GUCGUGGU-UG-AGGCGG- -5'
10815 5' -55 NC_002794.1 + 147006 0.7 0.837684
Target:  5'- gUCGGcGGCGGCGGcCGCCGgcGCUCgGUCu -3'
miRNA:   3'- gAGCU-CUGCUGUC-GUGGU--UGAGgCGG- -5'
10815 5' -55 NC_002794.1 + 64539 0.7 0.837684
Target:  5'- gCUCGAGGCGuACA--ACCAGC-CCGUCc -3'
miRNA:   3'- -GAGCUCUGC-UGUcgUGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 78003 0.7 0.837684
Target:  5'- gUUGuuccGGCGGCGGCGCCGucgggagaacGC-CCGCCg -3'
miRNA:   3'- gAGCu---CUGCUGUCGUGGU----------UGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 192997 0.7 0.840894
Target:  5'- cCUCGcccGGCGuguGCAGCGCCAGCggcguguacaucugCUGCCg -3'
miRNA:   3'- -GAGCu--CUGC---UGUCGUGGUUGa-------------GGCGG- -5'
10815 5' -55 NC_002794.1 + 53276 0.7 0.845654
Target:  5'- -aCGGGGCGGCgAGCgACC-ACUCCagguGCCg -3'
miRNA:   3'- gaGCUCUGCUG-UCG-UGGuUGAGG----CGG- -5'
10815 5' -55 NC_002794.1 + 106829 0.7 0.845654
Target:  5'- gUCGuccGGCGcuCGGcCugCGGCUCCGCCu -3'
miRNA:   3'- gAGCu--CUGCu-GUC-GugGUUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 93225 0.7 0.845654
Target:  5'- -aCGAGcACGACcuCAUCGACgugCCGCCc -3'
miRNA:   3'- gaGCUC-UGCUGucGUGGUUGa--GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.