miRNA display CGI


Results 101 - 120 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 54032 0.7 0.845654
Target:  5'- uCUUG-GGCGuCAGCugCGAC-CCGUCg -3'
miRNA:   3'- -GAGCuCUGCuGUCGugGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 93225 0.7 0.845654
Target:  5'- -aCGAGcACGACcuCAUCGACgugCCGCCc -3'
miRNA:   3'- gaGCUC-UGCUGucGUGGUUGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 151618 0.7 0.845654
Target:  5'- cCUCGGcuGACGGcCGGCACuUGGCUcgCCGCCg -3'
miRNA:   3'- -GAGCU--CUGCU-GUCGUG-GUUGA--GGCGG- -5'
10815 5' -55 NC_002794.1 + 190237 0.7 0.845654
Target:  5'- gUCGuccauguGCgGACAGC-CCGACUCCGCUu -3'
miRNA:   3'- gAGCuc-----UG-CUGUCGuGGUUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 78341 0.7 0.84879
Target:  5'- --gGAGGCGccggaaugucggccaGCAGCuCCAacacggccuGCUCCGCCa -3'
miRNA:   3'- gagCUCUGC---------------UGUCGuGGU---------UGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 115141 0.7 0.852667
Target:  5'- gUCGGGugGAgGucggucacgguccGCACCAGCUCCugguagacgGCCc -3'
miRNA:   3'- gAGCUCugCUgU-------------CGUGGUUGAGG---------CGG- -5'
10815 5' -55 NC_002794.1 + 187834 0.7 0.853437
Target:  5'- gCUCGGcuCGGC-GCGCCGaggGCUCUGCCc -3'
miRNA:   3'- -GAGCUcuGCUGuCGUGGU---UGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 130345 0.7 0.853437
Target:  5'- -gCGGcGACGACGaCGCCGACgacgacggucUCCGCCu -3'
miRNA:   3'- gaGCU-CUGCUGUcGUGGUUG----------AGGCGG- -5'
10815 5' -55 NC_002794.1 + 41281 0.7 0.853437
Target:  5'- -cCGAGaACGGCGGCGgcuCCGACgcgggCCGCg -3'
miRNA:   3'- gaGCUC-UGCUGUCGU---GGUUGa----GGCGg -5'
10815 5' -55 NC_002794.1 + 18269 0.7 0.853437
Target:  5'- -gCGAGAUGcGCGGCGCCGAgccuucgaacCgagCCGCCc -3'
miRNA:   3'- gaGCUCUGC-UGUCGUGGUU----------Ga--GGCGG- -5'
10815 5' -55 NC_002794.1 + 184724 0.7 0.853437
Target:  5'- -cCGAG-CGACAGgccaaCGCCAGgUCCGCg -3'
miRNA:   3'- gaGCUCuGCUGUC-----GUGGUUgAGGCGg -5'
10815 5' -55 NC_002794.1 + 102066 0.7 0.853437
Target:  5'- uUCGAGccggGCGACcuGCcgcggGCCGACgagCCGCCg -3'
miRNA:   3'- gAGCUC----UGCUGu-CG-----UGGUUGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 114720 0.7 0.85877
Target:  5'- -gCGGcGGCGGCGGCuccggguucgucgaGCCGGCgCCGCCc -3'
miRNA:   3'- gaGCU-CUGCUGUCG--------------UGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 193786 0.7 0.861026
Target:  5'- gCUCGAucgcccGACGACgccGGCGCCcGCUCgucuggCGCCg -3'
miRNA:   3'- -GAGCU------CUGCUG---UCGUGGuUGAG------GCGG- -5'
10815 5' -55 NC_002794.1 + 24030 0.7 0.861026
Target:  5'- cCUCGGcGACGGCGGUcCCuccccgUCCGCCc -3'
miRNA:   3'- -GAGCU-CUGCUGUCGuGGuug---AGGCGG- -5'
10815 5' -55 NC_002794.1 + 80039 0.7 0.861026
Target:  5'- aCUCGc--CGACAGUGCCGGCgcgagCCGCg -3'
miRNA:   3'- -GAGCucuGCUGUCGUGGUUGa----GGCGg -5'
10815 5' -55 NC_002794.1 + 65268 0.7 0.861026
Target:  5'- -cCGAG-CGGCGGCGCCucCU-CGCCc -3'
miRNA:   3'- gaGCUCuGCUGUCGUGGuuGAgGCGG- -5'
10815 5' -55 NC_002794.1 + 121354 0.69 0.867687
Target:  5'- -cCGGGAaguucguCGACGGCguccgaGCCGGCcgCCGCCg -3'
miRNA:   3'- gaGCUCU-------GCUGUCG------UGGUUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 80598 0.69 0.868417
Target:  5'- -aCGAGAaccUGACGG-ACgGACUCUGCCu -3'
miRNA:   3'- gaGCUCU---GCUGUCgUGgUUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 192930 0.69 0.868417
Target:  5'- aUCGAGAUGaACGGcCAgCAGCUgCGCa -3'
miRNA:   3'- gAGCUCUGC-UGUC-GUgGUUGAgGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.