miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 159662 0.66 0.964999
Target:  5'- --gGAGGCGACGaucuGUACCGAUacguaaaccucacguUCCGUCa -3'
miRNA:   3'- gagCUCUGCUGU----CGUGGUUG---------------AGGCGG- -5'
10815 5' -55 NC_002794.1 + 23470 0.66 0.963701
Target:  5'- gUCGGGGCGGaggGGUcuGCCAugaucGCgCCGCCg -3'
miRNA:   3'- gAGCUCUGCUg--UCG--UGGU-----UGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 34275 0.66 0.963701
Target:  5'- -gCGcAGGCGGcCAGCGCCAGCgaCCGg- -3'
miRNA:   3'- gaGC-UCUGCU-GUCGUGGUUGa-GGCgg -5'
10815 5' -55 NC_002794.1 + 44718 0.66 0.963701
Target:  5'- -cCGcGGCGAC-GUcgGCCGGCgCCGCCg -3'
miRNA:   3'- gaGCuCUGCUGuCG--UGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 23237 0.66 0.963701
Target:  5'- -cCGGGGCGuuGCcGUGCgAGcCUCCGCCg -3'
miRNA:   3'- gaGCUCUGC--UGuCGUGgUU-GAGGCGG- -5'
10815 5' -55 NC_002794.1 + 189137 0.66 0.963701
Target:  5'- -gCGGGGcCGcCAGCGCCAgACUCUcCCg -3'
miRNA:   3'- gaGCUCU-GCuGUCGUGGU-UGAGGcGG- -5'
10815 5' -55 NC_002794.1 + 72400 0.66 0.963701
Target:  5'- aCUCGAGcACG-UAGCACa----CCGCCg -3'
miRNA:   3'- -GAGCUC-UGCuGUCGUGguugaGGCGG- -5'
10815 5' -55 NC_002794.1 + 57613 0.66 0.963701
Target:  5'- -cCGAGAaGGCGGCcgacgaccugGCCGAC-CCGCa -3'
miRNA:   3'- gaGCUCUgCUGUCG----------UGGUUGaGGCGg -5'
10815 5' -55 NC_002794.1 + 113934 0.66 0.963701
Target:  5'- -cCGAGGCGACGG-GCCg---CUGCCg -3'
miRNA:   3'- gaGCUCUGCUGUCgUGGuugaGGCGG- -5'
10815 5' -55 NC_002794.1 + 68932 0.66 0.963701
Target:  5'- cCUCGucgcccgcGGGCcGCGGCGCCGGCgccucucccuccUCCGCg -3'
miRNA:   3'- -GAGC--------UCUGcUGUCGUGGUUG------------AGGCGg -5'
10815 5' -55 NC_002794.1 + 129840 0.66 0.963701
Target:  5'- gUCGAGGCGG-AGCGgaAcCUCCGUCg -3'
miRNA:   3'- gAGCUCUGCUgUCGUggUuGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 124124 0.66 0.963701
Target:  5'- aCUCGAGagcGCGucucCGGCGCCcgggagcgguCUCCGCg -3'
miRNA:   3'- -GAGCUC---UGCu---GUCGUGGuu--------GAGGCGg -5'
10815 5' -55 NC_002794.1 + 136933 0.66 0.963701
Target:  5'- -cCGAGuuGACGGCGCCGAgauaguCcCCGCa -3'
miRNA:   3'- gaGCUCugCUGUCGUGGUU------GaGGCGg -5'
10815 5' -55 NC_002794.1 + 140607 0.66 0.963701
Target:  5'- -cCGAGACGGCGaacuCGCCGGcCUCCGa- -3'
miRNA:   3'- gaGCUCUGCUGUc---GUGGUU-GAGGCgg -5'
10815 5' -55 NC_002794.1 + 52159 0.66 0.963371
Target:  5'- aCUCGAaccaggcGGCGGCGGUGCgCAucgcCUgCGCCa -3'
miRNA:   3'- -GAGCU-------CUGCUGUCGUG-GUu---GAgGCGG- -5'
10815 5' -55 NC_002794.1 + 52682 0.66 0.963371
Target:  5'- --aGGGACGccaggaaACGGCGCagaAACUCCcgGCCg -3'
miRNA:   3'- gagCUCUGC-------UGUCGUGg--UUGAGG--CGG- -5'
10815 5' -55 NC_002794.1 + 127095 0.66 0.963039
Target:  5'- gCUgGAGAgCGGCGGCucGCCGAUgaacagcucgagCCGCUg -3'
miRNA:   3'- -GAgCUCU-GCUGUCG--UGGUUGa-----------GGCGG- -5'
10815 5' -55 NC_002794.1 + 94297 0.66 0.962705
Target:  5'- --gGGGGCGGCucgggcGCGCCGAugcaaggacugcauCUCUGCCu -3'
miRNA:   3'- gagCUCUGCUGu-----CGUGGUU--------------GAGGCGG- -5'
10815 5' -55 NC_002794.1 + 136378 0.66 0.960309
Target:  5'- -aUGAGGuCGuugAGCACCGGCUCCGg- -3'
miRNA:   3'- gaGCUCU-GCug-UCGUGGUUGAGGCgg -5'
10815 5' -55 NC_002794.1 + 94072 0.66 0.960309
Target:  5'- --gGGGGCGAgGGCACCuACgacCUGUCg -3'
miRNA:   3'- gagCUCUGCUgUCGUGGuUGa--GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.