miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 57350 0.66 0.960309
Target:  5'- gCUCGAcgccagcucCGACAGCAUccucgaCAACcCCGCCa -3'
miRNA:   3'- -GAGCUcu-------GCUGUCGUG------GUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 52896 0.66 0.960309
Target:  5'- gUCGA-ACG-CGGCGCCGccGCcgucgCCGCCg -3'
miRNA:   3'- gAGCUcUGCuGUCGUGGU--UGa----GGCGG- -5'
10815 5' -55 NC_002794.1 + 44427 0.66 0.960309
Target:  5'- -cCGAGcggcuCGACGaCACCGGCgcgcCCGCCc -3'
miRNA:   3'- gaGCUCu----GCUGUcGUGGUUGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 16347 0.66 0.960309
Target:  5'- -cCGAcGACGuCGGCGCC-AC-CCGCa -3'
miRNA:   3'- gaGCU-CUGCuGUCGUGGuUGaGGCGg -5'
10815 5' -55 NC_002794.1 + 58384 0.66 0.960309
Target:  5'- --gGAGGCGcGCgGGCGCCAGCUgcuggagcaCGCCa -3'
miRNA:   3'- gagCUCUGC-UG-UCGUGGUUGAg--------GCGG- -5'
10815 5' -55 NC_002794.1 + 94072 0.66 0.960309
Target:  5'- --gGGGGCGAgGGCACCuACgacCUGUCg -3'
miRNA:   3'- gagCUCUGCUgUCGUGGuUGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 136378 0.66 0.960309
Target:  5'- -aUGAGGuCGuugAGCACCGGCUCCGg- -3'
miRNA:   3'- gaGCUCU-GCug-UCGUGGUUGAGGCgg -5'
10815 5' -55 NC_002794.1 + 125327 0.66 0.960309
Target:  5'- -cCGAGccggagcgcgccACGGC-GCACCGGCagCCGCUg -3'
miRNA:   3'- gaGCUC------------UGCUGuCGUGGUUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 12635 0.66 0.959958
Target:  5'- uUCGAGcacaccuACGACgGGUACCG-CaCCGCCa -3'
miRNA:   3'- gAGCUC-------UGCUG-UCGUGGUuGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 153052 0.66 0.958171
Target:  5'- cCUCGGGcggacgguccccgaGCGACGGUcggaagcucgccagACUGACgcgCCGCCu -3'
miRNA:   3'- -GAGCUC--------------UGCUGUCG--------------UGGUUGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 89928 0.66 0.956703
Target:  5'- --aGAGGCGcgGGCGCCGGCUUCucgggaGCCg -3'
miRNA:   3'- gagCUCUGCugUCGUGGUUGAGG------CGG- -5'
10815 5' -55 NC_002794.1 + 36626 0.66 0.956703
Target:  5'- gCUCGAcGACGAa--CGCCGucgGCUCCGgCa -3'
miRNA:   3'- -GAGCU-CUGCUgucGUGGU---UGAGGCgG- -5'
10815 5' -55 NC_002794.1 + 84027 0.66 0.956703
Target:  5'- -aCGAGcgacGCGAgCGGCACgAACggcacgacgCCGCCu -3'
miRNA:   3'- gaGCUC----UGCU-GUCGUGgUUGa--------GGCGG- -5'
10815 5' -55 NC_002794.1 + 183869 0.66 0.956703
Target:  5'- gUCGGGGCcAC--CGCCGACaCCGCCg -3'
miRNA:   3'- gAGCUCUGcUGucGUGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 190562 0.66 0.956703
Target:  5'- gUCGc--CGACAGCACCGcgaacggguaGCUCucgCGCCg -3'
miRNA:   3'- gAGCucuGCUGUCGUGGU----------UGAG---GCGG- -5'
10815 5' -55 NC_002794.1 + 191662 0.66 0.956703
Target:  5'- -cCGGGG-GACGGCGCCGGCagCGgCg -3'
miRNA:   3'- gaGCUCUgCUGUCGUGGUUGagGCgG- -5'
10815 5' -55 NC_002794.1 + 81253 0.66 0.956703
Target:  5'- -aCG-GACGAC-GCGCUGGcCUUCGCCc -3'
miRNA:   3'- gaGCuCUGCUGuCGUGGUU-GAGGCGG- -5'
10815 5' -55 NC_002794.1 + 141980 0.66 0.956703
Target:  5'- gUCGcAGGCGcACGGgACCGA--CCGCCc -3'
miRNA:   3'- gAGC-UCUGC-UGUCgUGGUUgaGGCGG- -5'
10815 5' -55 NC_002794.1 + 82707 0.66 0.956703
Target:  5'- -cCGAGACGcgccgaggacGCcGCGCCAccacucgccGCgagCCGCCg -3'
miRNA:   3'- gaGCUCUGC----------UGuCGUGGU---------UGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 53055 0.66 0.956703
Target:  5'- gCUCcAGcguaGGCAGCGCCGcg-CCGCCa -3'
miRNA:   3'- -GAGcUCug--CUGUCGUGGUugaGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.