miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 49 0.65 0.972652
Target:  5'- uCUCG-GACGAacg-GCCGACgcCCGCCa -3'
miRNA:   3'- -GAGCuCUGCUgucgUGGUUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 279 0.66 0.960309
Target:  5'- -gCGAgGACGGCGGCcCUGGCg-CGCCg -3'
miRNA:   3'- gaGCU-CUGCUGUCGuGGUUGagGCGG- -5'
10815 5' -55 NC_002794.1 + 8134 0.72 0.768072
Target:  5'- cCUCGGugaccGGCGACGGCACCGcuuCUCCuucucccccggGCCc -3'
miRNA:   3'- -GAGCU-----CUGCUGUCGUGGUu--GAGG-----------CGG- -5'
10815 5' -55 NC_002794.1 + 10761 0.69 0.882579
Target:  5'- -aCGAGACGACGGCGgCGuggagcugcAgUgCGCCa -3'
miRNA:   3'- gaGCUCUGCUGUCGUgGU---------UgAgGCGG- -5'
10815 5' -55 NC_002794.1 + 12207 0.72 0.717587
Target:  5'- gCUCG-GACGugccggcggcgucgGCGGCGCCGGCggCGCCg -3'
miRNA:   3'- -GAGCuCUGC--------------UGUCGUGGUUGagGCGG- -5'
10815 5' -55 NC_002794.1 + 12413 0.69 0.895884
Target:  5'- -aCGcGGACGGCGcGCGCCGACUggcagcugucCCGCg -3'
miRNA:   3'- gaGC-UCUGCUGU-CGUGGUUGA----------GGCGg -5'
10815 5' -55 NC_002794.1 + 12635 0.66 0.959958
Target:  5'- uUCGAGcacaccuACGACgGGUACCG-CaCCGCCa -3'
miRNA:   3'- gAGCUC-------UGCUG-UCGUGGUuGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 14187 0.74 0.641049
Target:  5'- -cCGAGACGuCAGCGucCCGGC-CCGCUg -3'
miRNA:   3'- gaGCUCUGCuGUCGU--GGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 14511 0.66 0.956703
Target:  5'- gCUCGcGGCGcucgUGGCGCCG-CUCgGCCa -3'
miRNA:   3'- -GAGCuCUGCu---GUCGUGGUuGAGgCGG- -5'
10815 5' -55 NC_002794.1 + 16347 0.66 0.960309
Target:  5'- -cCGAcGACGuCGGCGCC-AC-CCGCa -3'
miRNA:   3'- gaGCU-CUGCuGUCGUGGuUGaGGCGg -5'
10815 5' -55 NC_002794.1 + 16465 0.68 0.914174
Target:  5'- aCUCGuc-CGGCuGC-CCAGC-CCGCCg -3'
miRNA:   3'- -GAGCucuGCUGuCGuGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 16721 0.71 0.79528
Target:  5'- -cCGAGGaGuCuGCGCCGGCUCCGUCc -3'
miRNA:   3'- gaGCUCUgCuGuCGUGGUUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 16775 0.67 0.948839
Target:  5'- -aCGA-ACGGCAcGCGCCGACgccaaaUCGCCg -3'
miRNA:   3'- gaGCUcUGCUGU-CGUGGUUGa-----GGCGG- -5'
10815 5' -55 NC_002794.1 + 16877 0.67 0.940079
Target:  5'- -cCGccGCGGCAGCaACCAcCgCCGCCg -3'
miRNA:   3'- gaGCucUGCUGUCG-UGGUuGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 17253 0.66 0.964999
Target:  5'- ----cGACGGCGGCGacCCGGCUcgucacccgggcacgCCGCCg -3'
miRNA:   3'- gagcuCUGCUGUCGU--GGUUGA---------------GGCGG- -5'
10815 5' -55 NC_002794.1 + 17788 0.67 0.940079
Target:  5'- uUCGAGACcuuacGCuGCACCGAgUCgGUCu -3'
miRNA:   3'- gAGCUCUGc----UGuCGUGGUUgAGgCGG- -5'
10815 5' -55 NC_002794.1 + 18010 0.66 0.966886
Target:  5'- -aCGAgGACGGCGuGUuCCAACUguacgugacggCCGCCa -3'
miRNA:   3'- gaGCU-CUGCUGU-CGuGGUUGA-----------GGCGG- -5'
10815 5' -55 NC_002794.1 + 18269 0.7 0.853437
Target:  5'- -gCGAGAUGcGCGGCGCCGAgccuucgaacCgagCCGCCc -3'
miRNA:   3'- gaGCUCUGC-UGUCGUGGUU----------Ga--GGCGG- -5'
10815 5' -55 NC_002794.1 + 18611 0.68 0.925226
Target:  5'- cCUCGAcGGCacCGGCcgccccuccgacGCCcGCUCCGCCg -3'
miRNA:   3'- -GAGCU-CUGcuGUCG------------UGGuUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 18656 0.71 0.79528
Target:  5'- -cCGGGACGACcGuCGCCGcuuccucgGCUgCCGCCg -3'
miRNA:   3'- gaGCUCUGCUGuC-GUGGU--------UGA-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.