miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 18703 0.7 0.829534
Target:  5'- -aCGGcGGCGGCGGUccggacgucggaGCCGACgagCCGCCc -3'
miRNA:   3'- gaGCU-CUGCUGUCG------------UGGUUGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 19459 0.73 0.710743
Target:  5'- -aCGAG-CGGCGGCGgCGGCgggacCCGCCg -3'
miRNA:   3'- gaGCUCuGCUGUCGUgGUUGa----GGCGG- -5'
10815 5' -55 NC_002794.1 + 19521 0.67 0.948839
Target:  5'- gCUCGGaGCGcCGGCGCggcgCGGC-CCGCCg -3'
miRNA:   3'- -GAGCUcUGCuGUCGUG----GUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 20270 0.72 0.739815
Target:  5'- --aGAGAcCGACGGCgACCGAa-CCGCCg -3'
miRNA:   3'- gagCUCU-GCUGUCG-UGGUUgaGGCGG- -5'
10815 5' -55 NC_002794.1 + 20517 0.69 0.882579
Target:  5'- ----cGACGGCAGCGCCAACggaCUGgCg -3'
miRNA:   3'- gagcuCUGCUGUCGUGGUUGa--GGCgG- -5'
10815 5' -55 NC_002794.1 + 20542 0.7 0.821212
Target:  5'- uUCGcGACGACGGgcgaccggauccCGCCGucGCUCCGCa -3'
miRNA:   3'- gAGCuCUGCUGUC------------GUGGU--UGAGGCGg -5'
10815 5' -55 NC_002794.1 + 21368 0.67 0.948839
Target:  5'- --aGAGACG-CGGCGgCGGCcgCCGUCu -3'
miRNA:   3'- gagCUCUGCuGUCGUgGUUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 21665 0.68 0.919261
Target:  5'- -gCGGuGGCGGCGGCGguauucgcccgcuCCGGCUccCCGCCu -3'
miRNA:   3'- gaGCU-CUGCUGUCGU-------------GGUUGA--GGCGG- -5'
10815 5' -55 NC_002794.1 + 21923 0.69 0.895884
Target:  5'- --gGAGACGACGGCGgCGGCgcggCGCUc -3'
miRNA:   3'- gagCUCUGCUGUCGUgGUUGag--GCGG- -5'
10815 5' -55 NC_002794.1 + 22902 0.7 0.829534
Target:  5'- gUUG-GugGACGGCGgCGACcgcggCCGCCa -3'
miRNA:   3'- gAGCuCugCUGUCGUgGUUGa----GGCGG- -5'
10815 5' -55 NC_002794.1 + 23237 0.66 0.963701
Target:  5'- -cCGGGGCGuuGCcGUGCgAGcCUCCGCCg -3'
miRNA:   3'- gaGCUCUGC--UGuCGUGgUU-GAGGCGG- -5'
10815 5' -55 NC_002794.1 + 23470 0.66 0.963701
Target:  5'- gUCGGGGCGGaggGGUcuGCCAugaucGCgCCGCCg -3'
miRNA:   3'- gAGCUCUGCUg--UCG--UGGU-----UGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 23978 0.71 0.812723
Target:  5'- -gCGAGGC--CGGCGCCAccgucGCUCCGUCc -3'
miRNA:   3'- gaGCUCUGcuGUCGUGGU-----UGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 24030 0.7 0.861026
Target:  5'- cCUCGGcGACGGCGGUcCCuccccgUCCGCCc -3'
miRNA:   3'- -GAGCU-CUGCUGUCGuGGuug---AGGCGG- -5'
10815 5' -55 NC_002794.1 + 24203 0.68 0.930408
Target:  5'- -cCGAGcGCGGCGGCccgcucacCCGugUCCGUCc -3'
miRNA:   3'- gaGCUC-UGCUGUCGu-------GGUugAGGCGG- -5'
10815 5' -55 NC_002794.1 + 24413 0.67 0.952881
Target:  5'- uCUCGAGA-GACAcCGCCGauGCUCggggCGCCc -3'
miRNA:   3'- -GAGCUCUgCUGUcGUGGU--UGAG----GCGG- -5'
10815 5' -55 NC_002794.1 + 29918 0.69 0.882579
Target:  5'- ----cGACGACgGGCAgCGACgagCCGCCg -3'
miRNA:   3'- gagcuCUGCUG-UCGUgGUUGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 30089 0.68 0.902206
Target:  5'- -aCGAGGCGcGCGGCcggucCCGACccaCCGCCc -3'
miRNA:   3'- gaGCUCUGC-UGUCGu----GGUUGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 30671 0.67 0.944572
Target:  5'- -aCGAGGCGAUcucGCAcguCCGGCggacgugcacguUCCGCCg -3'
miRNA:   3'- gaGCUCUGCUGu--CGU---GGUUG------------AGGCGG- -5'
10815 5' -55 NC_002794.1 + 30982 0.65 0.972652
Target:  5'- cCUCcccGGCGACGGCggggucuucGCCGgACgucgCCGCCg -3'
miRNA:   3'- -GAGcu-CUGCUGUCG---------UGGU-UGa---GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.