miRNA display CGI


Results 41 - 60 of 319 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 31328 0.68 0.902206
Target:  5'- uCUCGucGGCu-CGGCgcccGCCGugUCCGCCg -3'
miRNA:   3'- -GAGCu-CUGcuGUCG----UGGUugAGGCGG- -5'
10815 5' -55 NC_002794.1 + 31874 0.68 0.902206
Target:  5'- gUCGAGgguGCGACAGUacucgACCAGCggcgcgUCGCUg -3'
miRNA:   3'- gAGCUC---UGCUGUCG-----UGGUUGa-----GGCGG- -5'
10815 5' -55 NC_002794.1 + 32304 0.68 0.908303
Target:  5'- -cCGcGGCGGCcGCGCCGGCcgCgGCCg -3'
miRNA:   3'- gaGCuCUGCUGuCGUGGUUGa-GgCGG- -5'
10815 5' -55 NC_002794.1 + 32653 0.82 0.265116
Target:  5'- -cCGGGGCGACGGCGCCGuccccguCgUCCGCCa -3'
miRNA:   3'- gaGCUCUGCUGUCGUGGUu------G-AGGCGG- -5'
10815 5' -55 NC_002794.1 + 34050 0.67 0.952881
Target:  5'- -cCGGGcCGGCccGCGCaCGAC-CCGCCg -3'
miRNA:   3'- gaGCUCuGCUGu-CGUG-GUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 34275 0.66 0.963701
Target:  5'- -gCGcAGGCGGcCAGCGCCAGCgaCCGg- -3'
miRNA:   3'- gaGC-UCUGCU-GUCGUGGUUGa-GGCgg -5'
10815 5' -55 NC_002794.1 + 34334 0.66 0.966886
Target:  5'- -cCGcaAGGCGACGGcCGCgCcgUUCCGCCc -3'
miRNA:   3'- gaGC--UCUGCUGUC-GUG-GuuGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 35285 0.68 0.925226
Target:  5'- -cCGGGugGGCGucguGCGCCcucgGACggaCCGCCa -3'
miRNA:   3'- gaGCUCugCUGU----CGUGG----UUGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 36012 0.66 0.966886
Target:  5'- gCUCG-GGCGGCGGaauccgccguCCGGCccggCCGCCc -3'
miRNA:   3'- -GAGCuCUGCUGUCgu--------GGUUGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 36491 0.66 0.966886
Target:  5'- uCUCGuacAGGCaGC-GCACCAcCUCgGCCa -3'
miRNA:   3'- -GAGC---UCUGcUGuCGUGGUuGAGgCGG- -5'
10815 5' -55 NC_002794.1 + 36626 0.66 0.956703
Target:  5'- gCUCGAcGACGAa--CGCCGucgGCUCCGgCa -3'
miRNA:   3'- -GAGCU-CUGCUgucGUGGU---UGAGGCgG- -5'
10815 5' -55 NC_002794.1 + 36908 0.68 0.925226
Target:  5'- --aGAGGuCG-CGGCGCCGGCcCCGCg -3'
miRNA:   3'- gagCUCU-GCuGUCGUGGUUGaGGCGg -5'
10815 5' -55 NC_002794.1 + 37105 0.67 0.944572
Target:  5'- aCUCGuucaGCGucACGGCGaagacccgCAGCUCCGCCg -3'
miRNA:   3'- -GAGCuc--UGC--UGUCGUg-------GUUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 37753 0.72 0.730203
Target:  5'- -gCGGcGCGGCGGCGCCGGCgggagCgGCCg -3'
miRNA:   3'- gaGCUcUGCUGUCGUGGUUGa----GgCGG- -5'
10815 5' -55 NC_002794.1 + 37879 0.72 0.717587
Target:  5'- uCUCGGGcggcgggggcggugGCGGCGGCAgCGGCU-CGCCg -3'
miRNA:   3'- -GAGCUC--------------UGCUGUCGUgGUUGAgGCGG- -5'
10815 5' -55 NC_002794.1 + 38490 0.72 0.739815
Target:  5'- --gGAGgaagcGCGGCGGCGCCggUcgCCGCCg -3'
miRNA:   3'- gagCUC-----UGCUGUCGUGGuuGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 39989 0.7 0.836877
Target:  5'- uUCGAGACGACacguuuauuuuggGGCuGCCGGCUa-GCCu -3'
miRNA:   3'- gAGCUCUGCUG-------------UCG-UGGUUGAggCGG- -5'
10815 5' -55 NC_002794.1 + 40508 0.68 0.919815
Target:  5'- gCUCGAGuC-ACGGcCGCCGACg-CGCCg -3'
miRNA:   3'- -GAGCUCuGcUGUC-GUGGUUGagGCGG- -5'
10815 5' -55 NC_002794.1 + 40602 0.72 0.739815
Target:  5'- -cCGAGucguCGcCGGCGuCCGACUCCGCg -3'
miRNA:   3'- gaGCUCu---GCuGUCGU-GGUUGAGGCGg -5'
10815 5' -55 NC_002794.1 + 41281 0.7 0.853437
Target:  5'- -cCGAGaACGGCGGCGgcuCCGACgcgggCCGCg -3'
miRNA:   3'- gaGCUC-UGCUGUCGU---GGUUGa----GGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.