miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 41841 0.68 0.902206
Target:  5'- gUCGGGuCGAuCAGCAgccCCAGg-CCGCCg -3'
miRNA:   3'- gAGCUCuGCU-GUCGU---GGUUgaGGCGG- -5'
10815 5' -55 NC_002794.1 + 42237 0.83 0.230088
Target:  5'- -gCGAGACGGCGGCgacgaacuccgaGCCcGCUCCGCCc -3'
miRNA:   3'- gaGCUCUGCUGUCG------------UGGuUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 44174 0.67 0.952881
Target:  5'- -gCGAG-CGGCGGCucgUCGACUCCGg- -3'
miRNA:   3'- gaGCUCuGCUGUCGu--GGUUGAGGCgg -5'
10815 5' -55 NC_002794.1 + 44235 0.68 0.908303
Target:  5'- gCUCGgugccGGGCGGCucGGUGCCGggcgGCUCgGCCg -3'
miRNA:   3'- -GAGC-----UCUGCUG--UCGUGGU----UGAGgCGG- -5'
10815 5' -55 NC_002794.1 + 44427 0.66 0.960309
Target:  5'- -cCGAGcggcuCGACGaCACCGGCgcgcCCGCCc -3'
miRNA:   3'- gaGCUCu----GCUGUcGUGGUUGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 44718 0.66 0.963701
Target:  5'- -cCGcGGCGAC-GUcgGCCGGCgCCGCCg -3'
miRNA:   3'- gaGCuCUGCUGuCG--UGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 46185 0.71 0.804077
Target:  5'- -cCGAGACccCGGCACCGcgcucGCUcgCCGCCg -3'
miRNA:   3'- gaGCUCUGcuGUCGUGGU-----UGA--GGCGG- -5'
10815 5' -55 NC_002794.1 + 46317 0.72 0.739815
Target:  5'- -gCGGcGGCGACGGCGCCGucgCCGCg -3'
miRNA:   3'- gaGCU-CUGCUGUCGUGGUugaGGCGg -5'
10815 5' -55 NC_002794.1 + 46723 0.66 0.966886
Target:  5'- cCUCcAGAUcaACAGCuuccugACCGACuUCCGCCg -3'
miRNA:   3'- -GAGcUCUGc-UGUCG------UGGUUG-AGGCGG- -5'
10815 5' -55 NC_002794.1 + 48156 0.74 0.631001
Target:  5'- -aCGAGGCaGCGGCGCCGcUUCaCGCCg -3'
miRNA:   3'- gaGCUCUGcUGUCGUGGUuGAG-GCGG- -5'
10815 5' -55 NC_002794.1 + 48453 0.71 0.803204
Target:  5'- aUCGGGAC-ACAGcCGCCAcgucaggGCgaagCCGCCg -3'
miRNA:   3'- gAGCUCUGcUGUC-GUGGU-------UGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 48540 0.72 0.720509
Target:  5'- gCUCGGGuCGGCcG-ACC-ACUCCGCCg -3'
miRNA:   3'- -GAGCUCuGCUGuCgUGGuUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 48910 0.7 0.845654
Target:  5'- gCUCGGGGCcgcuccGCAGCGCCAgcgccaggcGCUCgGCg -3'
miRNA:   3'- -GAGCUCUGc-----UGUCGUGGU---------UGAGgCGg -5'
10815 5' -55 NC_002794.1 + 49217 0.7 0.829534
Target:  5'- uUCGAGGCGccGCGcCGCCAACagggCCGUCg -3'
miRNA:   3'- gAGCUCUGC--UGUcGUGGUUGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 49370 0.66 0.966886
Target:  5'- gUCGAuGugGAagaagcGCGCCAGg-CCGCCg -3'
miRNA:   3'- gAGCU-CugCUgu----CGUGGUUgaGGCGG- -5'
10815 5' -55 NC_002794.1 + 49604 0.75 0.561091
Target:  5'- aUCGGcGACGGCgGGCGCCGGCggCGCCu -3'
miRNA:   3'- gAGCU-CUGCUG-UCGUGGUUGagGCGG- -5'
10815 5' -55 NC_002794.1 + 50329 0.76 0.541451
Target:  5'- uCUCGucGAUGuugggcuCGGuCACCGGCUCCGCCa -3'
miRNA:   3'- -GAGCu-CUGCu------GUC-GUGGUUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 50734 0.67 0.948422
Target:  5'- -cCGGGGCGGCcGCcUCGACucgcucgUCCGCCc -3'
miRNA:   3'- gaGCUCUGCUGuCGuGGUUG-------AGGCGG- -5'
10815 5' -55 NC_002794.1 + 51057 0.68 0.902206
Target:  5'- -cCGAGACGGCGGCGacggCGACcUCCGa- -3'
miRNA:   3'- gaGCUCUGCUGUCGUg---GUUG-AGGCgg -5'
10815 5' -55 NC_002794.1 + 51094 0.66 0.966886
Target:  5'- gCUCGgaaaAGACGACcGCGCCucgcGCUCggaCGUCg -3'
miRNA:   3'- -GAGC----UCUGCUGuCGUGGu---UGAG---GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.