miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 52159 0.66 0.963371
Target:  5'- aCUCGAaccaggcGGCGGCGGUGCgCAucgcCUgCGCCa -3'
miRNA:   3'- -GAGCU-------CUGCUGUCGUG-GUu---GAgGCGG- -5'
10815 5' -55 NC_002794.1 + 52565 0.69 0.882579
Target:  5'- -cUGAGACGAcCGGCGCCucagagCCGCa -3'
miRNA:   3'- gaGCUCUGCU-GUCGUGGuuga--GGCGg -5'
10815 5' -55 NC_002794.1 + 52612 0.71 0.786342
Target:  5'- -cCGAGACGcCcGC-CCGACcgCCGCCg -3'
miRNA:   3'- gaGCUCUGCuGuCGuGGUUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 52682 0.66 0.963371
Target:  5'- --aGGGACGccaggaaACGGCGCagaAACUCCcgGCCg -3'
miRNA:   3'- gagCUCUGC-------UGUCGUGg--UUGAGG--CGG- -5'
10815 5' -55 NC_002794.1 + 52896 0.66 0.960309
Target:  5'- gUCGA-ACG-CGGCGCCGccGCcgucgCCGCCg -3'
miRNA:   3'- gAGCUcUGCuGUCGUGGU--UGa----GGCGG- -5'
10815 5' -55 NC_002794.1 + 53055 0.66 0.956703
Target:  5'- gCUCcAGcguaGGCAGCGCCGcg-CCGCCa -3'
miRNA:   3'- -GAGcUCug--CUGUCGUGGUugaGGCGG- -5'
10815 5' -55 NC_002794.1 + 53276 0.7 0.845654
Target:  5'- -aCGGGGCGGCgAGCgACC-ACUCCagguGCCg -3'
miRNA:   3'- gaGCUCUGCUG-UCG-UGGuUGAGG----CGG- -5'
10815 5' -55 NC_002794.1 + 53324 0.72 0.724396
Target:  5'- -gCGAGAuCGGCucgaaccgcaccuccGGCGCCcacgucAACUCCGCCg -3'
miRNA:   3'- gaGCUCU-GCUG---------------UCGUGG------UUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 53720 0.72 0.768072
Target:  5'- cCUCgGGGugGACccGCGCCAucGCcggCCGCCg -3'
miRNA:   3'- -GAG-CUCugCUGu-CGUGGU--UGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 53893 0.68 0.914174
Target:  5'- gUCGGGAcucCGGCGGCGuccucgucgccgUCGGCggcgCCGCCg -3'
miRNA:   3'- gAGCUCU---GCUGUCGU------------GGUUGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 54032 0.7 0.845654
Target:  5'- uCUUG-GGCGuCAGCugCGAC-CCGUCg -3'
miRNA:   3'- -GAGCuCUGCuGUCGugGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 54989 0.73 0.710743
Target:  5'- -cCGcGGCGACGGCGgCGACucgccgggcgUCCGCCg -3'
miRNA:   3'- gaGCuCUGCUGUCGUgGUUG----------AGGCGG- -5'
10815 5' -55 NC_002794.1 + 55185 0.78 0.438615
Target:  5'- aCUCGAGGCGGCGGCcCUAACaCCGgCg -3'
miRNA:   3'- -GAGCUCUGCUGUCGuGGUUGaGGCgG- -5'
10815 5' -55 NC_002794.1 + 55354 0.66 0.960309
Target:  5'- -cCGAGGCGGCcgaGGCGgCCGAggCgGCCg -3'
miRNA:   3'- gaGCUCUGCUG---UCGU-GGUUgaGgCGG- -5'
10815 5' -55 NC_002794.1 + 55408 0.69 0.868417
Target:  5'- -cCGAGGCGGCcgaGGCGaccCCGGCgUCCGCg -3'
miRNA:   3'- gaGCUCUGCUG---UCGU---GGUUG-AGGCGg -5'
10815 5' -55 NC_002794.1 + 55600 0.66 0.969867
Target:  5'- uCUUGAaGCGGCGGaaCGCCAGC-CCGUg -3'
miRNA:   3'- -GAGCUcUGCUGUC--GUGGUUGaGGCGg -5'
10815 5' -55 NC_002794.1 + 57350 0.66 0.960309
Target:  5'- gCUCGAcgccagcucCGACAGCAUccucgaCAACcCCGCCa -3'
miRNA:   3'- -GAGCUcu-------GCUGUCGUG------GUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 57613 0.66 0.963701
Target:  5'- -cCGAGAaGGCGGCcgacgaccugGCCGAC-CCGCa -3'
miRNA:   3'- gaGCUCUgCUGUCG----------UGGUUGaGGCGg -5'
10815 5' -55 NC_002794.1 + 57987 0.67 0.935358
Target:  5'- -gCGAGcCGAC-GCGCCAGgcCUUCGUCg -3'
miRNA:   3'- gaGCUCuGCUGuCGUGGUU--GAGGCGG- -5'
10815 5' -55 NC_002794.1 + 58077 0.68 0.908303
Target:  5'- -gCGGGACgGGCGGC-CCGGCgcCCGCg -3'
miRNA:   3'- gaGCUCUG-CUGUCGuGGUUGa-GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.