miRNA display CGI


Results 101 - 120 of 319 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 58384 0.66 0.960309
Target:  5'- --gGAGGCGcGCgGGCGCCAGCUgcuggagcaCGCCa -3'
miRNA:   3'- gagCUCUGC-UG-UCGUGGUUGAg--------GCGG- -5'
10815 5' -55 NC_002794.1 + 59298 0.73 0.710743
Target:  5'- gCUCGAcGcCGcGCAGCGCCAcggcgcgcccgACUUCGCCg -3'
miRNA:   3'- -GAGCU-CuGC-UGUCGUGGU-----------UGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 59728 0.71 0.804077
Target:  5'- uUCGAGGcCGACcgccugcucuacAGCACCAAgUCCuCCa -3'
miRNA:   3'- gAGCUCU-GCUG------------UCGUGGUUgAGGcGG- -5'
10815 5' -55 NC_002794.1 + 60640 0.68 0.905892
Target:  5'- -cCGGcGcCGGCGGCGCCGGCcacccggcgcgcgCCGCCg -3'
miRNA:   3'- gaGCU-CuGCUGUCGUGGUUGa------------GGCGG- -5'
10815 5' -55 NC_002794.1 + 61509 0.8 0.332884
Target:  5'- cCUCGcccgccGGACGGCGGcCGCCGGCggCCGCCg -3'
miRNA:   3'- -GAGC------UCUGCUGUC-GUGGUUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 61544 0.68 0.914174
Target:  5'- -gCGaAGACGACGcCGCCGcgGCggcggCCGCCg -3'
miRNA:   3'- gaGC-UCUGCUGUcGUGGU--UGa----GGCGG- -5'
10815 5' -55 NC_002794.1 + 62082 0.66 0.969867
Target:  5'- -gCGGcGACGACGGCgACgCGGCg-CGCCg -3'
miRNA:   3'- gaGCU-CUGCUGUCG-UG-GUUGagGCGG- -5'
10815 5' -55 NC_002794.1 + 62376 0.68 0.908303
Target:  5'- gCUCG-GACGAagcgcuGCACCuccGACUgaCCGCCu -3'
miRNA:   3'- -GAGCuCUGCUgu----CGUGG---UUGA--GGCGG- -5'
10815 5' -55 NC_002794.1 + 62493 0.76 0.502914
Target:  5'- -gCGAGugGACGGCgggcggcgccGCCGGCgccUCCGCCc -3'
miRNA:   3'- gaGCUCugCUGUCG----------UGGUUG---AGGCGG- -5'
10815 5' -55 NC_002794.1 + 62572 0.66 0.966886
Target:  5'- ----cGACGAaccCAGCGCCGcCgCCGCCg -3'
miRNA:   3'- gagcuCUGCU---GUCGUGGUuGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 62887 0.69 0.895884
Target:  5'- uUCGuGACGcccCAGaaccccUACCAGCUCCGCg -3'
miRNA:   3'- gAGCuCUGCu--GUC------GUGGUUGAGGCGg -5'
10815 5' -55 NC_002794.1 + 63474 0.72 0.739815
Target:  5'- -aCGAGGCGGCGGcCGCCGucgACgacgCCGCg -3'
miRNA:   3'- gaGCUCUGCUGUC-GUGGU---UGa---GGCGg -5'
10815 5' -55 NC_002794.1 + 63699 0.85 0.176031
Target:  5'- -aUGAcGACGACGGCGCCGGCgCCGCCg -3'
miRNA:   3'- gaGCU-CUGCUGUCGUGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 63802 0.74 0.620955
Target:  5'- -cCGcGACGACGucccGCACCGACUUCGCg -3'
miRNA:   3'- gaGCuCUGCUGU----CGUGGUUGAGGCGg -5'
10815 5' -55 NC_002794.1 + 64539 0.7 0.837684
Target:  5'- gCUCGAGGCGuACA--ACCAGC-CCGUCc -3'
miRNA:   3'- -GAGCUCUGC-UGUcgUGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 64772 0.74 0.631001
Target:  5'- uUCGGGACGACGaagacGaCGCCggUUCCGCg -3'
miRNA:   3'- gAGCUCUGCUGU-----C-GUGGuuGAGGCGg -5'
10815 5' -55 NC_002794.1 + 64848 0.71 0.812723
Target:  5'- -aCGGcGCGGCGGCACCucGACgugCCGCUc -3'
miRNA:   3'- gaGCUcUGCUGUCGUGG--UUGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 65268 0.7 0.861026
Target:  5'- -cCGAG-CGGCGGCGCCucCU-CGCCc -3'
miRNA:   3'- gaGCUCuGCUGUCGUGGuuGAgGCGG- -5'
10815 5' -55 NC_002794.1 + 65305 1.12 0.003393
Target:  5'- cCUCGAGACGACAGCACCAACUCCGCCu -3'
miRNA:   3'- -GAGCUCUGCUGUCGUGGUUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 66044 0.65 0.972652
Target:  5'- gUCGGGcCGGCAGCGgCGGC-CUGUUc -3'
miRNA:   3'- gAGCUCuGCUGUCGUgGUUGaGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.