miRNA display CGI


Results 121 - 140 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 66420 0.75 0.600894
Target:  5'- -gCGaAGACGGCGGUugCGACcgucguuucugUCCGCCg -3'
miRNA:   3'- gaGC-UCUGCUGUCGugGUUG-----------AGGCGG- -5'
10815 5' -55 NC_002794.1 + 66741 0.68 0.908303
Target:  5'- -gCGGuGGCGGCGGCGCguACgaCCGCUg -3'
miRNA:   3'- gaGCU-CUGCUGUCGUGguUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 67012 0.78 0.412528
Target:  5'- -aCGAGuccgGCGGCGGCgGCCGGCUCcCGCCg -3'
miRNA:   3'- gaGCUC----UGCUGUCG-UGGUUGAG-GCGG- -5'
10815 5' -55 NC_002794.1 + 67379 0.66 0.969867
Target:  5'- gUCGAaagaacGCGuCGGCGCCAGCgucggCGCCa -3'
miRNA:   3'- gAGCUc-----UGCuGUCGUGGUUGag---GCGG- -5'
10815 5' -55 NC_002794.1 + 68816 0.74 0.661115
Target:  5'- aCUCGAGACaGACGGCG---ACgCCGCCg -3'
miRNA:   3'- -GAGCUCUG-CUGUCGUgguUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 68932 0.66 0.963701
Target:  5'- cCUCGucgcccgcGGGCcGCGGCGCCGGCgccucucccuccUCCGCg -3'
miRNA:   3'- -GAGC--------UCUGcUGUCGUGGUUG------------AGGCGg -5'
10815 5' -55 NC_002794.1 + 69786 0.7 0.829534
Target:  5'- -aCGAGccACGAgAGCGCCGccGCguagcCCGCCg -3'
miRNA:   3'- gaGCUC--UGCUgUCGUGGU--UGa----GGCGG- -5'
10815 5' -55 NC_002794.1 + 70338 0.66 0.966886
Target:  5'- -aCGccGACGGCcgGGCGCCcGCucgUCCGCCc -3'
miRNA:   3'- gaGCu-CUGCUG--UCGUGGuUG---AGGCGG- -5'
10815 5' -55 NC_002794.1 + 70870 0.73 0.710743
Target:  5'- -cCGGcGGCGGCAGCGgCGGCUCCucgagcGCCa -3'
miRNA:   3'- gaGCU-CUGCUGUCGUgGUUGAGG------CGG- -5'
10815 5' -55 NC_002794.1 + 71311 0.69 0.889341
Target:  5'- gCUCG-GGCGGCGagcGCGCCAcCUCgGCg -3'
miRNA:   3'- -GAGCuCUGCUGU---CGUGGUuGAGgCGg -5'
10815 5' -55 NC_002794.1 + 71919 0.68 0.902206
Target:  5'- cCUCGAcGGCGACgacuuccaGGuCGCgCAGCUCCucGCCg -3'
miRNA:   3'- -GAGCU-CUGCUG--------UC-GUG-GUUGAGG--CGG- -5'
10815 5' -55 NC_002794.1 + 72400 0.66 0.963701
Target:  5'- aCUCGAGcACG-UAGCACa----CCGCCg -3'
miRNA:   3'- -GAGCUC-UGCuGUCGUGguugaGGCGG- -5'
10815 5' -55 NC_002794.1 + 74844 0.65 0.972652
Target:  5'- -aCGuGACGACccGGCcaACgGACUCCugGCCg -3'
miRNA:   3'- gaGCuCUGCUG--UCG--UGgUUGAGG--CGG- -5'
10815 5' -55 NC_002794.1 + 75344 0.71 0.804077
Target:  5'- -cCGAagaccGGCGACGGUucgccACCGAC-CCGCCg -3'
miRNA:   3'- gaGCU-----CUGCUGUCG-----UGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 75484 0.73 0.709763
Target:  5'- -cCGAGACGGCccgcguacgagccGGCaACCAG-UCCGCCg -3'
miRNA:   3'- gaGCUCUGCUG-------------UCG-UGGUUgAGGCGG- -5'
10815 5' -55 NC_002794.1 + 75651 0.72 0.749336
Target:  5'- -aCGAG-CGGCAGCggcGCCG--UCCGCCg -3'
miRNA:   3'- gaGCUCuGCUGUCG---UGGUugAGGCGG- -5'
10815 5' -55 NC_002794.1 + 76259 0.71 0.811866
Target:  5'- gUCGAGACGcucuACGGC-CCGcuggaccuccagaGCUUCGCCc -3'
miRNA:   3'- gAGCUCUGC----UGUCGuGGU-------------UGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 78003 0.7 0.837684
Target:  5'- gUUGuuccGGCGGCGGCGCCGucgggagaacGC-CCGCCg -3'
miRNA:   3'- gAGCu---CUGCUGUCGUGGU----------UGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 78104 0.69 0.889341
Target:  5'- -gCGAaacGCGGCGGCGCCuccaGACgCCGCCc -3'
miRNA:   3'- gaGCUc--UGCUGUCGUGG----UUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 78147 0.69 0.882579
Target:  5'- gCUCGAGACGccgcucgagccGCgAGCGCUcguAACccgUCCGCCc -3'
miRNA:   3'- -GAGCUCUGC-----------UG-UCGUGG---UUG---AGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.