miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 195266 0.7 0.836877
Target:  5'- -gCGGGgacugcaGCGACAcGCACCGAC-CCGCg -3'
miRNA:   3'- gaGCUC-------UGCUGU-CGUGGUUGaGGCGg -5'
10815 5' -55 NC_002794.1 + 194907 0.71 0.803204
Target:  5'- gCUCGuGcucgccgacagcaGCGGCcGCACCAGCUCCGaCg -3'
miRNA:   3'- -GAGCuC-------------UGCUGuCGUGGUUGAGGCgG- -5'
10815 5' -55 NC_002794.1 + 193786 0.7 0.861026
Target:  5'- gCUCGAucgcccGACGACgccGGCGCCcGCUCgucuggCGCCg -3'
miRNA:   3'- -GAGCU------CUGCUG---UCGUGGuUGAG------GCGG- -5'
10815 5' -55 NC_002794.1 + 193266 0.66 0.966576
Target:  5'- -cCGAGcagcagcaacaGCGGCGuGCGCCGguagucgccguccGCUCCGCg -3'
miRNA:   3'- gaGCUC-----------UGCUGU-CGUGGU-------------UGAGGCGg -5'
10815 5' -55 NC_002794.1 + 193144 0.67 0.952881
Target:  5'- cCUCGuGcccguacaGCGccuccaGCAGCACCAGC-CCGCg -3'
miRNA:   3'- -GAGCuC--------UGC------UGUCGUGGUUGaGGCGg -5'
10815 5' -55 NC_002794.1 + 192997 0.7 0.840894
Target:  5'- cCUCGcccGGCGuguGCAGCGCCAGCggcguguacaucugCUGCCg -3'
miRNA:   3'- -GAGCu--CUGC---UGUCGUGGUUGa-------------GGCGG- -5'
10815 5' -55 NC_002794.1 + 192930 0.69 0.868417
Target:  5'- aUCGAGAUGaACGGcCAgCAGCUgCGCa -3'
miRNA:   3'- gAGCUCUGC-UGUC-GUgGUUGAgGCGg -5'
10815 5' -55 NC_002794.1 + 192664 0.69 0.882579
Target:  5'- gCUCGc-GCGACucgaAGCGCCGGCcgCCGUCg -3'
miRNA:   3'- -GAGCucUGCUG----UCGUGGUUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 192632 0.71 0.804077
Target:  5'- gUCG-GGCGGCcGCuCCAGCcgcgCCGCCg -3'
miRNA:   3'- gAGCuCUGCUGuCGuGGUUGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 192274 0.73 0.700912
Target:  5'- uCUCGcGACGACAcGCgacccggagACCAGCUUCGCg -3'
miRNA:   3'- -GAGCuCUGCUGU-CG---------UGGUUGAGGCGg -5'
10815 5' -55 NC_002794.1 + 191662 0.66 0.956703
Target:  5'- -cCGGGG-GACGGCGCCGGCagCGgCg -3'
miRNA:   3'- gaGCUCUgCUGUCGUGGUUGagGCgG- -5'
10815 5' -55 NC_002794.1 + 191508 0.65 0.971837
Target:  5'- -cCGAGAgGugcCAGCGCCGGgcgucggcccgcgcCUCcCGCCg -3'
miRNA:   3'- gaGCUCUgCu--GUCGUGGUU--------------GAG-GCGG- -5'
10815 5' -55 NC_002794.1 + 190730 0.73 0.710743
Target:  5'- --gGAGACG-CAGCGCCcg--CCGCCg -3'
miRNA:   3'- gagCUCUGCuGUCGUGGuugaGGCGG- -5'
10815 5' -55 NC_002794.1 + 190562 0.66 0.956703
Target:  5'- gUCGc--CGACAGCACCGcgaacggguaGCUCucgCGCCg -3'
miRNA:   3'- gAGCucuGCUGUCGUGGU----------UGAG---GCGG- -5'
10815 5' -55 NC_002794.1 + 190237 0.7 0.845654
Target:  5'- gUCGuccauguGCgGACAGC-CCGACUCCGCUu -3'
miRNA:   3'- gAGCuc-----UG-CUGUCGuGGUUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 189892 0.68 0.914174
Target:  5'- gCUCGGGcccgcCGuCAGCGCCGccGCgcgaCCGCCc -3'
miRNA:   3'- -GAGCUCu----GCuGUCGUGGU--UGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 189613 0.66 0.969867
Target:  5'- -cCGAGACc----CGCCGACUCgGCCg -3'
miRNA:   3'- gaGCUCUGcugucGUGGUUGAGgCGG- -5'
10815 5' -55 NC_002794.1 + 189137 0.66 0.963701
Target:  5'- -gCGGGGcCGcCAGCGCCAgACUCUcCCg -3'
miRNA:   3'- gaGCUCU-GCuGUCGUGGU-UGAGGcGG- -5'
10815 5' -55 NC_002794.1 + 187834 0.7 0.853437
Target:  5'- gCUCGGcuCGGC-GCGCCGaggGCUCUGCCc -3'
miRNA:   3'- -GAGCUcuGCUGuCGUGGU---UGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 187365 0.72 0.768072
Target:  5'- -aCGuAGGCG-C-GCAgCAGCUCCGCCg -3'
miRNA:   3'- gaGC-UCUGCuGuCGUgGUUGAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.