miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 173752 0.68 0.902206
Target:  5'- uCUCGAuACGAUAGUAaCAGgUCCGCg -3'
miRNA:   3'- -GAGCUcUGCUGUCGUgGUUgAGGCGg -5'
10815 5' -55 NC_002794.1 + 159662 0.66 0.964999
Target:  5'- --gGAGGCGACGaucuGUACCGAUacguaaaccucacguUCCGUCa -3'
miRNA:   3'- gagCUCUGCUGU----CGUGGUUG---------------AGGCGG- -5'
10815 5' -55 NC_002794.1 + 153052 0.66 0.958171
Target:  5'- cCUCGGGcggacgguccccgaGCGACGGUcggaagcucgccagACUGACgcgCCGCCu -3'
miRNA:   3'- -GAGCUC--------------UGCUGUCG--------------UGGUUGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 152140 0.67 0.935358
Target:  5'- -cCGAGcCGGuucaacccgcucCAGCGCCuGCgggCCGCCg -3'
miRNA:   3'- gaGCUCuGCU------------GUCGUGGuUGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 152112 0.69 0.889341
Target:  5'- -cUGGGGCuuGCuGCGCC-GCUCCGCCc -3'
miRNA:   3'- gaGCUCUGc-UGuCGUGGuUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 151953 0.68 0.919815
Target:  5'- -cCGcGACGACGGCcCCGgguGCUCCucgGCCc -3'
miRNA:   3'- gaGCuCUGCUGUCGuGGU---UGAGG---CGG- -5'
10815 5' -55 NC_002794.1 + 151919 0.68 0.930408
Target:  5'- -cCGAGcucCGucuGCGGCGCaagcGCUCCGCCg -3'
miRNA:   3'- gaGCUCu--GC---UGUCGUGgu--UGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 151767 0.69 0.889341
Target:  5'- cCUCGAGAUggaGACcGCGCCG-CUgcaCGCCa -3'
miRNA:   3'- -GAGCUCUG---CUGuCGUGGUuGAg--GCGG- -5'
10815 5' -55 NC_002794.1 + 151618 0.7 0.845654
Target:  5'- cCUCGGcuGACGGcCGGCACuUGGCUcgCCGCCg -3'
miRNA:   3'- -GAGCU--CUGCU-GUCGUG-GUUGA--GGCGG- -5'
10815 5' -55 NC_002794.1 + 150588 0.78 0.447518
Target:  5'- cCUCGggcgcccgaGGACGGCcgGGCGCCGGCUCUGCg -3'
miRNA:   3'- -GAGC---------UCUGCUG--UCGUGGUUGAGGCGg -5'
10815 5' -55 NC_002794.1 + 149958 0.67 0.939618
Target:  5'- gUCGGGACGuggccgaccugccGCGG-ACCGGCggCCGCUa -3'
miRNA:   3'- gAGCUCUGC-------------UGUCgUGGUUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 147141 0.67 0.935358
Target:  5'- uUCGAGACGGCcccggggccgcgAGgGCCAGCUggaCCGaCUg -3'
miRNA:   3'- gAGCUCUGCUG------------UCgUGGUUGA---GGC-GG- -5'
10815 5' -55 NC_002794.1 + 147006 0.7 0.837684
Target:  5'- gUCGGcGGCGGCGGcCGCCGgcGCUCgGUCu -3'
miRNA:   3'- gAGCU-CUGCUGUC-GUGGU--UGAGgCGG- -5'
10815 5' -55 NC_002794.1 + 146870 0.65 0.972652
Target:  5'- uUCGGGugGGgGGCGCgG--UCgGCCg -3'
miRNA:   3'- gAGCUCugCUgUCGUGgUugAGgCGG- -5'
10815 5' -55 NC_002794.1 + 145832 0.67 0.948839
Target:  5'- -cCGAGcgcguCGACGGuCGCCAcgcucgACgagCCGCCg -3'
miRNA:   3'- gaGCUCu----GCUGUC-GUGGU------UGa--GGCGG- -5'
10815 5' -55 NC_002794.1 + 145800 0.69 0.882579
Target:  5'- gCUCG-GACGACGaCGCCg---CCGCCg -3'
miRNA:   3'- -GAGCuCUGCUGUcGUGGuugaGGCGG- -5'
10815 5' -55 NC_002794.1 + 145732 0.75 0.600894
Target:  5'- gCUgGAGGCGGCGGCGCCGGCaUCGaCg -3'
miRNA:   3'- -GAgCUCUGCUGUCGUGGUUGaGGCgG- -5'
10815 5' -55 NC_002794.1 + 144974 0.7 0.837684
Target:  5'- cCUCGAcggugucGCGAcCGGCGCCGgGCgUCCGCCu -3'
miRNA:   3'- -GAGCUc------UGCU-GUCGUGGU-UG-AGGCGG- -5'
10815 5' -55 NC_002794.1 + 144893 0.68 0.902206
Target:  5'- -gCGAGACG-CucGCGCCGcuggGCcCCGCCg -3'
miRNA:   3'- gaGCUCUGCuGu-CGUGGU----UGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 142155 0.72 0.758758
Target:  5'- --gGAGGCGGCgguAGCACCGGCagCGUCg -3'
miRNA:   3'- gagCUCUGCUG---UCGUGGUUGagGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.