miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 141980 0.66 0.956703
Target:  5'- gUCGcAGGCGcACGGgACCGA--CCGCCc -3'
miRNA:   3'- gAGC-UCUGC-UGUCgUGGUUgaGGCGG- -5'
10815 5' -55 NC_002794.1 + 141423 0.67 0.952881
Target:  5'- cCUCgGGGGCGGCgggGGCGCCGGgggCGCCg -3'
miRNA:   3'- -GAG-CUCUGCUG---UCGUGGUUgagGCGG- -5'
10815 5' -55 NC_002794.1 + 141308 0.71 0.786342
Target:  5'- -gCGccGGCGACGGCACCGGCgUCgGCUc -3'
miRNA:   3'- gaGCu-CUGCUGUCGUGGUUG-AGgCGG- -5'
10815 5' -55 NC_002794.1 + 141091 0.66 0.966886
Target:  5'- gUCGAGcaacuggcGCGACGGUcgugggACgAACcgCCGCCa -3'
miRNA:   3'- gAGCUC--------UGCUGUCG------UGgUUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 140687 0.67 0.935358
Target:  5'- gUCGGuGCGACGG-ACCGGCcgCCGCg -3'
miRNA:   3'- gAGCUcUGCUGUCgUGGUUGa-GGCGg -5'
10815 5' -55 NC_002794.1 + 140607 0.66 0.963701
Target:  5'- -cCGAGACGGCGaacuCGCCGGcCUCCGa- -3'
miRNA:   3'- gaGCUCUGCUGUc---GUGGUU-GAGGCgg -5'
10815 5' -55 NC_002794.1 + 138539 0.67 0.944572
Target:  5'- gCUCGcu-CGGCGGCuuuucgccuccGCCcGCUCCGUCg -3'
miRNA:   3'- -GAGCucuGCUGUCG-----------UGGuUGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 138432 0.68 0.930408
Target:  5'- gUCGAGccgcggugGCGGCGGCGCC---UCgGCCu -3'
miRNA:   3'- gAGCUC--------UGCUGUCGUGGuugAGgCGG- -5'
10815 5' -55 NC_002794.1 + 137481 0.71 0.77727
Target:  5'- cCUCGuAGA--GCAGCGCCAcggucgguucCUCCGCCg -3'
miRNA:   3'- -GAGC-UCUgcUGUCGUGGUu---------GAGGCGG- -5'
10815 5' -55 NC_002794.1 + 136933 0.66 0.963701
Target:  5'- -cCGAGuuGACGGCGCCGAgauaguCcCCGCa -3'
miRNA:   3'- gaGCUCugCUGUCGUGGUU------GaGGCGg -5'
10815 5' -55 NC_002794.1 + 136434 0.66 0.966886
Target:  5'- -cCGGaGCGGCGGCugCG--UCCGCUg -3'
miRNA:   3'- gaGCUcUGCUGUCGugGUugAGGCGG- -5'
10815 5' -55 NC_002794.1 + 136378 0.66 0.960309
Target:  5'- -aUGAGGuCGuugAGCACCGGCUCCGg- -3'
miRNA:   3'- gaGCUCU-GCug-UCGUGGUUGAGGCgg -5'
10815 5' -55 NC_002794.1 + 134466 0.65 0.972652
Target:  5'- uUCGGGACGGCGcucucGuCGCCAGa-CCGCg -3'
miRNA:   3'- gAGCUCUGCUGU-----C-GUGGUUgaGGCGg -5'
10815 5' -55 NC_002794.1 + 134413 0.73 0.710743
Target:  5'- cCUCGAGGCGcCGGCGuuGugUCC-CCa -3'
miRNA:   3'- -GAGCUCUGCuGUCGUggUugAGGcGG- -5'
10815 5' -55 NC_002794.1 + 134094 0.68 0.919815
Target:  5'- aCUCGguccugccGGACGACGG-ACCccCUCCGUCc -3'
miRNA:   3'- -GAGC--------UCUGCUGUCgUGGuuGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 133920 0.66 0.969867
Target:  5'- -aCGAGACGGCGGC-CgcGC-CCGUCc -3'
miRNA:   3'- gaGCUCUGCUGUCGuGguUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 131275 0.67 0.935358
Target:  5'- -cCGGcaccacCGcCGGCGCCGucGCUCCGCCg -3'
miRNA:   3'- gaGCUcu----GCuGUCGUGGU--UGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 131179 0.68 0.930408
Target:  5'- uCUCGAGcCGgagacagcACGGCGCCGggGCggCGCCg -3'
miRNA:   3'- -GAGCUCuGC--------UGUCGUGGU--UGagGCGG- -5'
10815 5' -55 NC_002794.1 + 131021 0.68 0.908303
Target:  5'- gUCG-GugGucguGCGGCgcgGCCGGCUgCCGCCg -3'
miRNA:   3'- gAGCuCugC----UGUCG---UGGUUGA-GGCGG- -5'
10815 5' -55 NC_002794.1 + 130581 0.72 0.739815
Target:  5'- uCUCGAGcaaguCGGgCAGCGCUA--UCCGCCg -3'
miRNA:   3'- -GAGCUCu----GCU-GUCGUGGUugAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.