miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 130345 0.7 0.853437
Target:  5'- -gCGGcGACGACGaCGCCGACgacgacggucUCCGCCu -3'
miRNA:   3'- gaGCU-CUGCUGUcGUGGUUG----------AGGCGG- -5'
10815 5' -55 NC_002794.1 + 130094 0.68 0.913597
Target:  5'- --aGAGACGGCcgauuucgucgagAGCGCC---UCCGCCu -3'
miRNA:   3'- gagCUCUGCUG-------------UCGUGGuugAGGCGG- -5'
10815 5' -55 NC_002794.1 + 129939 0.69 0.895884
Target:  5'- -gCGAcGGCGGCGGCGgCGGCUCUGg- -3'
miRNA:   3'- gaGCU-CUGCUGUCGUgGUUGAGGCgg -5'
10815 5' -55 NC_002794.1 + 129840 0.66 0.963701
Target:  5'- gUCGAGGCGG-AGCGgaAcCUCCGUCg -3'
miRNA:   3'- gAGCUCUGCUgUCGUggUuGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 128305 0.69 0.875603
Target:  5'- -cCGAGACGGCgaccguGGCgACCgAGC-CCGCCc -3'
miRNA:   3'- gaGCUCUGCUG------UCG-UGG-UUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 128152 0.65 0.972652
Target:  5'- -gCGAcGCGACGGCG---GCUCgCGCCg -3'
miRNA:   3'- gaGCUcUGCUGUCGUgguUGAG-GCGG- -5'
10815 5' -55 NC_002794.1 + 127348 0.71 0.812723
Target:  5'- -cCGAGACGcucGCGGCGgCGGCgcggCCGCUc -3'
miRNA:   3'- gaGCUCUGC---UGUCGUgGUUGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 127095 0.66 0.963039
Target:  5'- gCUgGAGAgCGGCGGCucGCCGAUgaacagcucgagCCGCUg -3'
miRNA:   3'- -GAgCUCU-GCUGUCG--UGGUUGa-----------GGCGG- -5'
10815 5' -55 NC_002794.1 + 126606 0.66 0.969867
Target:  5'- -cCGAGGC--CGGCGCCGACgUCGCg -3'
miRNA:   3'- gaGCUCUGcuGUCGUGGUUGaGGCGg -5'
10815 5' -55 NC_002794.1 + 126434 0.66 0.966886
Target:  5'- gUCGAGGUGugGGCGCC---UCgGCCc -3'
miRNA:   3'- gAGCUCUGCugUCGUGGuugAGgCGG- -5'
10815 5' -55 NC_002794.1 + 125752 0.72 0.758758
Target:  5'- -gCGGGACGGCGGcCGgCGGCU-CGCCa -3'
miRNA:   3'- gaGCUCUGCUGUC-GUgGUUGAgGCGG- -5'
10815 5' -55 NC_002794.1 + 125327 0.66 0.960309
Target:  5'- -cCGAGccggagcgcgccACGGC-GCACCGGCagCCGCUg -3'
miRNA:   3'- gaGCUC------------UGCUGuCGUGGUUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 124971 0.66 0.966886
Target:  5'- gCUCaAGugGAUcGCGCCGcACgUCCGCg -3'
miRNA:   3'- -GAGcUCugCUGuCGUGGU-UG-AGGCGg -5'
10815 5' -55 NC_002794.1 + 124124 0.66 0.963701
Target:  5'- aCUCGAGagcGCGucucCGGCGCCcgggagcgguCUCCGCg -3'
miRNA:   3'- -GAGCUC---UGCu---GUCGUGGuu--------GAGGCGg -5'
10815 5' -55 NC_002794.1 + 122200 0.67 0.944572
Target:  5'- -aCGcGGCGaaGCGGUGCCGGCgCCGCUa -3'
miRNA:   3'- gaGCuCUGC--UGUCGUGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 121760 0.73 0.691025
Target:  5'- --gGAGAUGGCGGUGCCcgaGGCgCCGCCg -3'
miRNA:   3'- gagCUCUGCUGUCGUGG---UUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 121675 0.72 0.768072
Target:  5'- uCUUGGGACGuCAGUcUCGAgucuuCUCCGCCg -3'
miRNA:   3'- -GAGCUCUGCuGUCGuGGUU-----GAGGCGG- -5'
10815 5' -55 NC_002794.1 + 121474 0.75 0.561091
Target:  5'- gUCGAGACGAC--CGCCGGuucggacgcggcCUCCGCCg -3'
miRNA:   3'- gAGCUCUGCUGucGUGGUU------------GAGGCGG- -5'
10815 5' -55 NC_002794.1 + 121427 0.68 0.930408
Target:  5'- -cCGGGACcGCGGcCACCAccgagaccACggCCGCCg -3'
miRNA:   3'- gaGCUCUGcUGUC-GUGGU--------UGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 121354 0.69 0.867687
Target:  5'- -cCGGGAaguucguCGACGGCguccgaGCCGGCcgCCGCCg -3'
miRNA:   3'- gaGCUCU-------GCUGUCG------UGGUUGa-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.