miRNA display CGI


Results 101 - 120 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 120041 0.67 0.935358
Target:  5'- gUCGucauGACGGCGGCGgUGGCggCCGCg -3'
miRNA:   3'- gAGCu---CUGCUGUCGUgGUUGa-GGCGg -5'
10815 5' -55 NC_002794.1 + 119919 0.69 0.889341
Target:  5'- -cCGGGGacaucCGcACGGCGCCGAuCUCCaGCCg -3'
miRNA:   3'- gaGCUCU-----GC-UGUCGUGGUU-GAGG-CGG- -5'
10815 5' -55 NC_002794.1 + 119501 0.67 0.952881
Target:  5'- cCUCGGGGucguCGGCGGCGCgGAg-CCgGCCg -3'
miRNA:   3'- -GAGCUCU----GCUGUCGUGgUUgaGG-CGG- -5'
10815 5' -55 NC_002794.1 + 119145 0.67 0.944572
Target:  5'- uUCGGGugGuCGcGCAgCAGgUCCGCg -3'
miRNA:   3'- gAGCUCugCuGU-CGUgGUUgAGGCGg -5'
10815 5' -55 NC_002794.1 + 118268 0.79 0.379279
Target:  5'- -cCGGGGCGGCGGCGCCGGCgucggggaCCGCg -3'
miRNA:   3'- gaGCUCUGCUGUCGUGGUUGa-------GGCGg -5'
10815 5' -55 NC_002794.1 + 118173 0.76 0.531716
Target:  5'- gUCGuAGGCGGCGacGCGCCGACcuUCCGUCg -3'
miRNA:   3'- gAGC-UCUGCUGU--CGUGGUUG--AGGCGG- -5'
10815 5' -55 NC_002794.1 + 117696 0.69 0.875603
Target:  5'- cCUCGcacgccGCGACGGCGuggCAGCUCCGCg -3'
miRNA:   3'- -GAGCuc----UGCUGUCGUg--GUUGAGGCGg -5'
10815 5' -55 NC_002794.1 + 117623 0.67 0.935358
Target:  5'- -cCGAG-CGACagGGCGCCGACcgcgCgGCCc -3'
miRNA:   3'- gaGCUCuGCUG--UCGUGGUUGa---GgCGG- -5'
10815 5' -55 NC_002794.1 + 117073 0.72 0.720509
Target:  5'- cCUCGGGuACGGCGGCAgCGGCguguccacuUCgGCCg -3'
miRNA:   3'- -GAGCUC-UGCUGUCGUgGUUG---------AGgCGG- -5'
10815 5' -55 NC_002794.1 + 116888 0.72 0.758758
Target:  5'- --gGGGGCGcCGGCGCCGuCUCCGgCg -3'
miRNA:   3'- gagCUCUGCuGUCGUGGUuGAGGCgG- -5'
10815 5' -55 NC_002794.1 + 116121 0.69 0.882579
Target:  5'- gUCGAGuccgccGCGGCGGCGgCGGCggCgGCCa -3'
miRNA:   3'- gAGCUC------UGCUGUCGUgGUUGa-GgCGG- -5'
10815 5' -55 NC_002794.1 + 115979 0.66 0.966886
Target:  5'- -gCGGGACGgggaGCGGCGCCGcggAgaCCGCg -3'
miRNA:   3'- gaGCUCUGC----UGUCGUGGU---UgaGGCGg -5'
10815 5' -55 NC_002794.1 + 115924 0.76 0.541451
Target:  5'- aCUUGGcGCGGCGGCggGCCGGC-CCGCCg -3'
miRNA:   3'- -GAGCUcUGCUGUCG--UGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 115200 0.71 0.786342
Target:  5'- gUCGAGcCGGCguAGCGCC---UCCGCCu -3'
miRNA:   3'- gAGCUCuGCUG--UCGUGGuugAGGCGG- -5'
10815 5' -55 NC_002794.1 + 115141 0.7 0.852667
Target:  5'- gUCGGGugGAgGucggucacgguccGCACCAGCUCCugguagacgGCCc -3'
miRNA:   3'- gAGCUCugCUgU-------------CGUGGUUGAGG---------CGG- -5'
10815 5' -55 NC_002794.1 + 115057 0.68 0.930408
Target:  5'- -gCG-GGCGGCAGCGCCGuccAgUCCacgGCCu -3'
miRNA:   3'- gaGCuCUGCUGUCGUGGU---UgAGG---CGG- -5'
10815 5' -55 NC_002794.1 + 114720 0.7 0.85877
Target:  5'- -gCGGcGGCGGCGGCuccggguucgucgaGCCGGCgCCGCCc -3'
miRNA:   3'- gaGCU-CUGCUGUCG--------------UGGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 114526 0.68 0.902206
Target:  5'- gUCGAG-CGGCAGCcgcGCgAGCUgCGCg -3'
miRNA:   3'- gAGCUCuGCUGUCG---UGgUUGAgGCGg -5'
10815 5' -55 NC_002794.1 + 114104 0.67 0.943692
Target:  5'- -aCGAGcuCGuuCAGCGCCGACagcucguucuugCCGCCg -3'
miRNA:   3'- gaGCUCu-GCu-GUCGUGGUUGa-----------GGCGG- -5'
10815 5' -55 NC_002794.1 + 114047 0.67 0.952881
Target:  5'- -cCGuAGuCGcCGcGCACCAGCUCCGUg -3'
miRNA:   3'- gaGC-UCuGCuGU-CGUGGUUGAGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.