Results 1 - 20 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10815 | 5' | -55 | NC_002794.1 | + | 63699 | 0.85 | 0.176031 |
Target: 5'- -aUGAcGACGACGGCGCCGGCgCCGCCg -3' miRNA: 3'- gaGCU-CUGCUGUCGUGGUUGaGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 128152 | 0.65 | 0.972652 |
Target: 5'- -gCGAcGCGACGGCG---GCUCgCGCCg -3' miRNA: 3'- gaGCUcUGCUGUCGUgguUGAG-GCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 189613 | 0.66 | 0.969867 |
Target: 5'- -cCGAGACc----CGCCGACUCgGCCg -3' miRNA: 3'- gaGCUCUGcugucGUGGUUGAGgCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 62082 | 0.66 | 0.969867 |
Target: 5'- -gCGGcGACGACGGCgACgCGGCg-CGCCg -3' miRNA: 3'- gaGCU-CUGCUGUCG-UG-GUUGagGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 67379 | 0.66 | 0.969867 |
Target: 5'- gUCGAaagaacGCGuCGGCGCCAGCgucggCGCCa -3' miRNA: 3'- gAGCUc-----UGCuGUCGUGGUUGag---GCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 126606 | 0.66 | 0.969867 |
Target: 5'- -cCGAGGC--CGGCGCCGACgUCGCg -3' miRNA: 3'- gaGCUCUGcuGUCGUGGUUGaGGCGg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 133920 | 0.66 | 0.969867 |
Target: 5'- -aCGAGACGGCGGC-CgcGC-CCGUCc -3' miRNA: 3'- gaGCUCUGCUGUCGuGguUGaGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 55600 | 0.66 | 0.969867 |
Target: 5'- uCUUGAaGCGGCGGaaCGCCAGC-CCGUg -3' miRNA: 3'- -GAGCUcUGCUGUC--GUGGUUGaGGCGg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 103926 | 0.66 | 0.969867 |
Target: 5'- -aCGcGGCGAgCAGCGCgCGuggCCGCCg -3' miRNA: 3'- gaGCuCUGCU-GUCGUG-GUugaGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 112664 | 0.65 | 0.972652 |
Target: 5'- uCUCGcAGGCGGCGuucGUcuCCAGCUgCCGCg -3' miRNA: 3'- -GAGC-UCUGCUGU---CGu-GGUUGA-GGCGg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 191508 | 0.65 | 0.971837 |
Target: 5'- -cCGAGAgGugcCAGCGCCGGgcgucggcccgcgcCUCcCGCCg -3' miRNA: 3'- gaGCUCUgCu--GUCGUGGUU--------------GAG-GCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 49 | 0.65 | 0.972652 |
Target: 5'- uCUCG-GACGAacg-GCCGACgcCCGCCa -3' miRNA: 3'- -GAGCuCUGCUgucgUGGUUGa-GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 184513 | 0.65 | 0.972652 |
Target: 5'- -gCGGGccccGCGcGCGGCGCgGGCgacgCCGCCc -3' miRNA: 3'- gaGCUC----UGC-UGUCGUGgUUGa---GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 30982 | 0.65 | 0.972652 |
Target: 5'- cCUCcccGGCGACGGCggggucuucGCCGgACgucgCCGCCg -3' miRNA: 3'- -GAGcu-CUGCUGUCG---------UGGU-UGa---GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 146870 | 0.65 | 0.972652 |
Target: 5'- uUCGGGugGGgGGCGCgG--UCgGCCg -3' miRNA: 3'- gAGCUCugCUgUCGUGgUugAGgCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 179537 | 0.65 | 0.972652 |
Target: 5'- ----cGACGACGGCGgUAGCcCCGCg -3' miRNA: 3'- gagcuCUGCUGUCGUgGUUGaGGCGg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 105440 | 0.65 | 0.972652 |
Target: 5'- -cCGcGcCGGCGGCGCCGucgUUCUGCCc -3' miRNA: 3'- gaGCuCuGCUGUCGUGGUu--GAGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 134466 | 0.65 | 0.972652 |
Target: 5'- uUCGGGACGGCGcucucGuCGCCAGa-CCGCg -3' miRNA: 3'- gAGCUCUGCUGU-----C-GUGGUUgaGGCGg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 66044 | 0.65 | 0.972652 |
Target: 5'- gUCGGGcCGGCAGCGgCGGC-CUGUUc -3' miRNA: 3'- gAGCUCuGCUGUCGUgGUUGaGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 74844 | 0.65 | 0.972652 |
Target: 5'- -aCGuGACGACccGGCcaACgGACUCCugGCCg -3' miRNA: 3'- gaGCuCUGCUG--UCG--UGgUUGAGG--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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