Results 101 - 120 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10815 | 5' | -55 | NC_002794.1 | + | 52682 | 0.66 | 0.963371 |
Target: 5'- --aGGGACGccaggaaACGGCGCagaAACUCCcgGCCg -3' miRNA: 3'- gagCUCUGC-------UGUCGUGg--UUGAGG--CGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 52159 | 0.66 | 0.963371 |
Target: 5'- aCUCGAaccaggcGGCGGCGGUGCgCAucgcCUgCGCCa -3' miRNA: 3'- -GAGCU-------CUGCUGUCGUG-GUu---GAgGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 127095 | 0.66 | 0.963039 |
Target: 5'- gCUgGAGAgCGGCGGCucGCCGAUgaacagcucgagCCGCUg -3' miRNA: 3'- -GAgCUCU-GCUGUCG--UGGUUGa-----------GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 94297 | 0.66 | 0.962705 |
Target: 5'- --gGGGGCGGCucgggcGCGCCGAugcaaggacugcauCUCUGCCu -3' miRNA: 3'- gagCUCUGCUGu-----CGUGGUU--------------GAGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 125327 | 0.66 | 0.960309 |
Target: 5'- -cCGAGccggagcgcgccACGGC-GCACCGGCagCCGCUg -3' miRNA: 3'- gaGCUC------------UGCUGuCGUGGUUGa-GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 68932 | 0.66 | 0.963701 |
Target: 5'- cCUCGucgcccgcGGGCcGCGGCGCCGGCgccucucccuccUCCGCg -3' miRNA: 3'- -GAGC--------UCUGcUGUCGUGGUUG------------AGGCGg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 129840 | 0.66 | 0.963701 |
Target: 5'- gUCGAGGCGG-AGCGgaAcCUCCGUCg -3' miRNA: 3'- gAGCUCUGCUgUCGUggUuGAGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 126434 | 0.66 | 0.966886 |
Target: 5'- gUCGAGGUGugGGCGCC---UCgGCCc -3' miRNA: 3'- gAGCUCUGCugUCGUGGuugAGgCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 115979 | 0.66 | 0.966886 |
Target: 5'- -gCGGGACGgggaGCGGCGCCGcggAgaCCGCg -3' miRNA: 3'- gaGCUCUGC----UGUCGUGGU---UgaGGCGg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 97496 | 0.66 | 0.966886 |
Target: 5'- --gGAGACGuGCAGCAUgAACUguaUCGUCa -3' miRNA: 3'- gagCUCUGC-UGUCGUGgUUGA---GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 36491 | 0.66 | 0.966886 |
Target: 5'- uCUCGuacAGGCaGC-GCACCAcCUCgGCCa -3' miRNA: 3'- -GAGC---UCUGcUGuCGUGGUuGAGgCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 62572 | 0.66 | 0.966886 |
Target: 5'- ----cGACGAaccCAGCGCCGcCgCCGCCg -3' miRNA: 3'- gagcuCUGCU---GUCGUGGUuGaGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 18010 | 0.66 | 0.966886 |
Target: 5'- -aCGAgGACGGCGuGUuCCAACUguacgugacggCCGCCa -3' miRNA: 3'- gaGCU-CUGCUGU-CGuGGUUGA-----------GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 36012 | 0.66 | 0.966886 |
Target: 5'- gCUCG-GGCGGCGGaauccgccguCCGGCccggCCGCCc -3' miRNA: 3'- -GAGCuCUGCUGUCgu--------GGUUGa---GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 159662 | 0.66 | 0.964999 |
Target: 5'- --gGAGGCGACGaucuGUACCGAUacguaaaccucacguUCCGUCa -3' miRNA: 3'- gagCUCUGCUGU----CGUGGUUG---------------AGGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 193266 | 0.66 | 0.966576 |
Target: 5'- -cCGAGcagcagcaacaGCGGCGuGCGCCGguagucgccguccGCUCCGCg -3' miRNA: 3'- gaGCUC-----------UGCUGU-CGUGGU-------------UGAGGCGg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 17253 | 0.66 | 0.964999 |
Target: 5'- ----cGACGGCGGCGacCCGGCUcgucacccgggcacgCCGCCg -3' miRNA: 3'- gagcuCUGCUGUCGU--GGUUGA---------------GGCGG- -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 140607 | 0.66 | 0.963701 |
Target: 5'- -cCGAGACGGCGaacuCGCCGGcCUCCGa- -3' miRNA: 3'- gaGCUCUGCUGUc---GUGGUU-GAGGCgg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 136933 | 0.66 | 0.963701 |
Target: 5'- -cCGAGuuGACGGCGCCGAgauaguCcCCGCa -3' miRNA: 3'- gaGCUCugCUGUCGUGGUU------GaGGCGg -5' |
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10815 | 5' | -55 | NC_002794.1 | + | 124124 | 0.66 | 0.963701 |
Target: 5'- aCUCGAGagcGCGucucCGGCGCCcgggagcgguCUCCGCg -3' miRNA: 3'- -GAGCUC---UGCu---GUCGUGGuu--------GAGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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