miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10816 3' -55 NC_002794.1 + 156405 0.65 0.979129
Target:  5'- ---cCGGCGCCgcggccgCGGccACggCCGGCGGg -3'
miRNA:   3'- ggaaGCCGUGGa------GCUuuUG--GGCCGCC- -5'
10816 3' -55 NC_002794.1 + 41378 0.65 0.979129
Target:  5'- gCUcgCGGCGCCUCc----UUCGGCGGc -3'
miRNA:   3'- gGAa-GCCGUGGAGcuuuuGGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 105444 0.65 0.979129
Target:  5'- gCCggCGGCGCCgUCGuucuGCCCGuucUGGg -3'
miRNA:   3'- -GGaaGCCGUGG-AGCuuu-UGGGCc--GCC- -5'
10816 3' -55 NC_002794.1 + 10331 0.65 0.979129
Target:  5'- gCCgucgUCGGCGCCgCGAccgggugacGGACUgcucgaCGGUGGa -3'
miRNA:   3'- -GGa---AGCCGUGGaGCU---------UUUGG------GCCGCC- -5'
10816 3' -55 NC_002794.1 + 14633 0.65 0.979129
Target:  5'- ---aCGGgGCCgggcaCGGAGACgCCGGCGc -3'
miRNA:   3'- ggaaGCCgUGGa----GCUUUUG-GGCCGCc -5'
10816 3' -55 NC_002794.1 + 41596 0.65 0.979129
Target:  5'- ---aCGGCGCCUCGccGACgUcGCGGu -3'
miRNA:   3'- ggaaGCCGUGGAGCuuUUGgGcCGCC- -5'
10816 3' -55 NC_002794.1 + 86967 0.65 0.979129
Target:  5'- uCCgcugCGGCgaGCUgCGAcgAggUCCGGCGGc -3'
miRNA:   3'- -GGaa--GCCG--UGGaGCU--UuuGGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 137150 0.65 0.979129
Target:  5'- cCCggcCGGCcgcCCUCGGu--CCCGGCc- -3'
miRNA:   3'- -GGaa-GCCGu--GGAGCUuuuGGGCCGcc -5'
10816 3' -55 NC_002794.1 + 191980 0.65 0.979129
Target:  5'- uCCgaCGGCuCCUcCGAcgGCCgGGaCGGu -3'
miRNA:   3'- -GGaaGCCGuGGA-GCUuuUGGgCC-GCC- -5'
10816 3' -55 NC_002794.1 + 156196 0.65 0.979129
Target:  5'- --aUCGGaguCGCCggUCGGAGGgCCGGCGa -3'
miRNA:   3'- ggaAGCC---GUGG--AGCUUUUgGGCCGCc -5'
10816 3' -55 NC_002794.1 + 76314 0.65 0.979129
Target:  5'- cCCgcgcCGGCaACCagUCGuccucccuCCCGGCGGc -3'
miRNA:   3'- -GGaa--GCCG-UGG--AGCuuuu----GGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 184026 0.66 0.977791
Target:  5'- gCCgccaCGGCACCgcgcgcagcgcgcggUCGcgGGCCgCGGCGa -3'
miRNA:   3'- -GGaa--GCCGUGG---------------AGCuuUUGG-GCCGCc -5'
10816 3' -55 NC_002794.1 + 107431 0.66 0.976864
Target:  5'- cUCUgCGGCGCCUCGugcguGAGCUCauCGGa -3'
miRNA:   3'- -GGAaGCCGUGGAGCu----UUUGGGccGCC- -5'
10816 3' -55 NC_002794.1 + 95025 0.66 0.976864
Target:  5'- gCUgugCGGCAUCUCG-----CCGGUGGc -3'
miRNA:   3'- gGAa--GCCGUGGAGCuuuugGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 56599 0.66 0.976864
Target:  5'- gCCgcCGGCcuCCUCaugGAGAACUggaCGGCGGc -3'
miRNA:   3'- -GGaaGCCGu-GGAG---CUUUUGG---GCCGCC- -5'
10816 3' -55 NC_002794.1 + 119087 0.66 0.976864
Target:  5'- --cUCGGCGCC-CGGuuGCU-GGUGGg -3'
miRNA:   3'- ggaAGCCGUGGaGCUuuUGGgCCGCC- -5'
10816 3' -55 NC_002794.1 + 66524 0.66 0.976864
Target:  5'- gCCgucccCGGguCCgCGAAGgucgGCgCCGGCGGa -3'
miRNA:   3'- -GGaa---GCCguGGaGCUUU----UG-GGCCGCC- -5'
10816 3' -55 NC_002794.1 + 125764 0.66 0.976864
Target:  5'- ---cCGGCGgCUCGcc-ACCCGGCu- -3'
miRNA:   3'- ggaaGCCGUgGAGCuuuUGGGCCGcc -5'
10816 3' -55 NC_002794.1 + 65291 0.66 0.976628
Target:  5'- cCCcUCGGCGucguCCUCGAgacGAcagcaccaacuccGCCUGGCGc -3'
miRNA:   3'- -GGaAGCCGU----GGAGCU---UU-------------UGGGCCGCc -5'
10816 3' -55 NC_002794.1 + 90598 0.66 0.974424
Target:  5'- cCCgUCGG-GCCUCGAcgGuCgCGGUGGa -3'
miRNA:   3'- -GGaAGCCgUGGAGCUuuU-GgGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.