miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10816 3' -55 NC_002794.1 + 65062 1.12 0.003857
Target:  5'- aCCUUCGGCACCUCGAAAACCCGGCGGc -3'
miRNA:   3'- -GGAAGCCGUGGAGCUUUUGGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 83890 0.78 0.451751
Target:  5'- cCCgggcUCGGCGCC-CGAcGAGCCCGGCa- -3'
miRNA:   3'- -GGa---AGCCGUGGaGCU-UUUGGGCCGcc -5'
10816 3' -55 NC_002794.1 + 53806 0.78 0.460692
Target:  5'- --cUCGGCgggaGCCUCGGcggGAGCCuCGGCGGg -3'
miRNA:   3'- ggaAGCCG----UGGAGCU---UUUGG-GCCGCC- -5'
10816 3' -55 NC_002794.1 + 147674 0.78 0.469725
Target:  5'- gCCUgcUC-GCG-CUCGAGGACCCGGCGGc -3'
miRNA:   3'- -GGA--AGcCGUgGAGCUUUUGGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 177572 0.77 0.488057
Target:  5'- gCUUCGcGaCGCCgugacUCGAAGGCUCGGCGGa -3'
miRNA:   3'- gGAAGC-C-GUGG-----AGCUUUUGGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 112315 0.77 0.488057
Target:  5'- aCUUCGGCGCCgacggCGggGagcgcgccGgCCGGCGGc -3'
miRNA:   3'- gGAAGCCGUGGa----GCuuU--------UgGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 90974 0.76 0.535258
Target:  5'- gCUUCGGCgugGCCUCGuaccGGGCCgaGGCGGa -3'
miRNA:   3'- gGAAGCCG---UGGAGCu---UUUGGg-CCGCC- -5'
10816 3' -55 NC_002794.1 + 144278 0.76 0.564341
Target:  5'- gUCUUCGaCACgCUCaAGAACCCGGUGGa -3'
miRNA:   3'- -GGAAGCcGUG-GAGcUUUUGGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 134407 0.76 0.564341
Target:  5'- ---cCGGCGCCUCG-AGGCgCCGGCGu -3'
miRNA:   3'- ggaaGCCGUGGAGCuUUUG-GGCCGCc -5'
10816 3' -55 NC_002794.1 + 107533 0.76 0.564341
Target:  5'- gCCggcgCGGCGCCggcggCGAcGACCgCGGUGGg -3'
miRNA:   3'- -GGaa--GCCGUGGa----GCUuUUGG-GCCGCC- -5'
10816 3' -55 NC_002794.1 + 106946 0.75 0.582977
Target:  5'- gCCggCGGCGCCUgGAGAcacgcgucgccucGCgCGGCGGc -3'
miRNA:   3'- -GGaaGCCGUGGAgCUUU-------------UGgGCCGCC- -5'
10816 3' -55 NC_002794.1 + 44346 0.75 0.583961
Target:  5'- ---aCGGCGCCggcgagacCGAGAGCgCGGCGGg -3'
miRNA:   3'- ggaaGCCGUGGa-------GCUUUUGgGCCGCC- -5'
10816 3' -55 NC_002794.1 + 111083 0.75 0.583961
Target:  5'- cCCgUCGGCAgggUCGGcGGGCCCGGCGGg -3'
miRNA:   3'- -GGaAGCCGUgg-AGCU-UUUGGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 102174 0.75 0.623542
Target:  5'- gCCaucgUGGCGCgCggCGAGGACCUGGCGGc -3'
miRNA:   3'- -GGaa--GCCGUG-Ga-GCUUUUGGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 141020 0.75 0.623542
Target:  5'- uCUUUCGGCGCCccgUCGAGGcCCCGaCGGu -3'
miRNA:   3'- -GGAAGCCGUGG---AGCUUUuGGGCcGCC- -5'
10816 3' -55 NC_002794.1 + 186476 0.74 0.653316
Target:  5'- gCCcUC-GCuCCUgGAGGGCCCGGCGGc -3'
miRNA:   3'- -GGaAGcCGuGGAgCUUUUGGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 53768 0.74 0.663218
Target:  5'- gCCggCGGCgggacGCCcgCGAcgcGCCCGGCGGg -3'
miRNA:   3'- -GGaaGCCG-----UGGa-GCUuu-UGGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 137432 0.74 0.663218
Target:  5'- aCCgcgcCGGCGCuCUgGAAcGACUCGGCGGa -3'
miRNA:   3'- -GGaa--GCCGUG-GAgCUU-UUGGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 107150 0.74 0.673097
Target:  5'- --gUCGGCGCCcccggCGAGGGCCgccgcuacgCGGCGGa -3'
miRNA:   3'- ggaAGCCGUGGa----GCUUUUGG---------GCCGCC- -5'
10816 3' -55 NC_002794.1 + 50788 0.74 0.682945
Target:  5'- cUCgggCGGCGCCUCcuc-GCCCGGCGu -3'
miRNA:   3'- -GGaa-GCCGUGGAGcuuuUGGGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.