miRNA display CGI


Results 21 - 40 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10816 3' -55 NC_002794.1 + 120056 0.66 0.974424
Target:  5'- gCggUGGCgGCCgCGGAGGCCgacgCGGCGGu -3'
miRNA:   3'- gGaaGCCG-UGGaGCUUUUGG----GCCGCC- -5'
10816 3' -55 NC_002794.1 + 76771 0.66 0.974424
Target:  5'- -----uGCGCCUCGuagaaguccGAGCCgGGCGGg -3'
miRNA:   3'- ggaagcCGUGGAGCu--------UUUGGgCCGCC- -5'
10816 3' -55 NC_002794.1 + 145432 0.66 0.974424
Target:  5'- gCCgUCGGCucacgAgCUCGcGAGCC-GGCGGa -3'
miRNA:   3'- -GGaAGCCG-----UgGAGCuUUUGGgCCGCC- -5'
10816 3' -55 NC_002794.1 + 179668 0.66 0.974424
Target:  5'- gCCggaCGGCACCcgCGGcgGCgaCGGUGGc -3'
miRNA:   3'- -GGaa-GCCGUGGa-GCUuuUGg-GCCGCC- -5'
10816 3' -55 NC_002794.1 + 79399 0.66 0.974424
Target:  5'- cCCUguaCGaGCcCCuguUCGAcaagaccaaGGGCCCGGCGGc -3'
miRNA:   3'- -GGAa--GC-CGuGG---AGCU---------UUUGGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 110626 0.66 0.974424
Target:  5'- gCCg-CGGCGCCgcggcggcggggUCGGGuuucUCCGGCGGc -3'
miRNA:   3'- -GGaaGCCGUGG------------AGCUUuu--GGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 90598 0.66 0.974424
Target:  5'- cCCgUCGG-GCCUCGAcgGuCgCGGUGGa -3'
miRNA:   3'- -GGaAGCCgUGGAGCUuuU-GgGCCGCC- -5'
10816 3' -55 NC_002794.1 + 121322 0.66 0.974424
Target:  5'- --gUUGGC-CCUCG-AGGCgCCGcGCGGc -3'
miRNA:   3'- ggaAGCCGuGGAGCuUUUG-GGC-CGCC- -5'
10816 3' -55 NC_002794.1 + 92268 0.66 0.972872
Target:  5'- gCggCGGCGCCgggCGAGgcgcgcaaggucggcGACgaGGCGGg -3'
miRNA:   3'- gGaaGCCGUGGa--GCUU---------------UUGggCCGCC- -5'
10816 3' -55 NC_002794.1 + 103757 0.66 0.971801
Target:  5'- uCCg--GGUAcuCCUCGAAGAuggcgugcaucUCCGGCGGc -3'
miRNA:   3'- -GGaagCCGU--GGAGCUUUU-----------GGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 88535 0.66 0.971801
Target:  5'- aCCggaCGGUgauCCcCGuuAGCCCGGCGa -3'
miRNA:   3'- -GGaa-GCCGu--GGaGCuuUUGGGCCGCc -5'
10816 3' -55 NC_002794.1 + 67398 0.66 0.971801
Target:  5'- gCCagcgUCGGCGCCagcgUCGGcgccAGCgUCGGCGGc -3'
miRNA:   3'- -GGa---AGCCGUGG----AGCUu---UUG-GGCCGCC- -5'
10816 3' -55 NC_002794.1 + 30009 0.66 0.971801
Target:  5'- ---cCGGCgACCgacCGAGGACCUGGaGGa -3'
miRNA:   3'- ggaaGCCG-UGGa--GCUUUUGGGCCgCC- -5'
10816 3' -55 NC_002794.1 + 48322 0.66 0.971801
Target:  5'- gCUUCGuGCACaCggccCGGuacuCCCGGUGGu -3'
miRNA:   3'- gGAAGC-CGUG-Ga---GCUuuu-GGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 187767 0.66 0.971801
Target:  5'- gCCggcgcCGGuCGCCUCGAc--CCCGGaGGa -3'
miRNA:   3'- -GGaa---GCC-GUGGAGCUuuuGGGCCgCC- -5'
10816 3' -55 NC_002794.1 + 103346 0.66 0.971801
Target:  5'- aCCUcgGGCuCCUCGAAGACgaGGUGc -3'
miRNA:   3'- -GGAagCCGuGGAGCUUUUGggCCGCc -5'
10816 3' -55 NC_002794.1 + 40472 0.66 0.971801
Target:  5'- cCCUUCgGGCgGCUcaUCGAAcGgCCGGCGc -3'
miRNA:   3'- -GGAAG-CCG-UGG--AGCUUuUgGGCCGCc -5'
10816 3' -55 NC_002794.1 + 109531 0.66 0.971801
Target:  5'- uCgUUCGGCG--UCGG--GCCgGGCGGa -3'
miRNA:   3'- -GgAAGCCGUggAGCUuuUGGgCCGCC- -5'
10816 3' -55 NC_002794.1 + 121600 0.66 0.971801
Target:  5'- uCgUUCGGCgacgAUUUCGAAGucAUCCGGCuGGa -3'
miRNA:   3'- -GgAAGCCG----UGGAGCUUU--UGGGCCG-CC- -5'
10816 3' -55 NC_002794.1 + 122497 0.66 0.971801
Target:  5'- aCgagUCGGCGCCgcaGGAGGgcuucUCCGGcCGGa -3'
miRNA:   3'- gGa--AGCCGUGGag-CUUUU-----GGGCC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.