miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10816 3' -55 NC_002794.1 + 538 0.69 0.913327
Target:  5'- cCCUUCuuGGCAUCUUGcccGGCCuCGGCGcGg -3'
miRNA:   3'- -GGAAG--CCGUGGAGCuu-UUGG-GCCGC-C- -5'
10816 3' -55 NC_002794.1 + 1054 0.66 0.965985
Target:  5'- aCUUCGaGCGCC-CGccccccCCCGGgGGu -3'
miRNA:   3'- gGAAGC-CGUGGaGCuuuu--GGGCCgCC- -5'
10816 3' -55 NC_002794.1 + 3118 0.67 0.962449
Target:  5'- aCCUU-GGCGCgagCUCGAAAAaugaggaaccgacCCCGGUGa -3'
miRNA:   3'- -GGAAgCCGUG---GAGCUUUU-------------GGGCCGCc -5'
10816 3' -55 NC_002794.1 + 10331 0.65 0.979129
Target:  5'- gCCgucgUCGGCGCCgCGAccgggugacGGACUgcucgaCGGUGGa -3'
miRNA:   3'- -GGa---AGCCGUGGaGCU---------UUUGG------GCCGCC- -5'
10816 3' -55 NC_002794.1 + 11369 0.68 0.924321
Target:  5'- gCUUUCGGCaaaagccgGCCUCGAcccACgCCGGCu- -3'
miRNA:   3'- -GGAAGCCG--------UGGAGCUuu-UG-GGCCGcc -5'
10816 3' -55 NC_002794.1 + 12197 0.71 0.812893
Target:  5'- gCCg--GGCGCCgcUCGGAcGugCCGGCGGc -3'
miRNA:   3'- -GGaagCCGUGG--AGCUU-UugGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 12921 0.72 0.759612
Target:  5'- aCCgccUGGC-CgUCGAcGACCUGGCGGa -3'
miRNA:   3'- -GGaa-GCCGuGgAGCUuUUGGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 14633 0.65 0.979129
Target:  5'- ---aCGGgGCCgggcaCGGAGACgCCGGCGc -3'
miRNA:   3'- ggaaGCCgUGGa----GCUUUUG-GGCCGCc -5'
10816 3' -55 NC_002794.1 + 15259 0.66 0.965985
Target:  5'- cUCUUCGG-ACCgUCGgcGAgCCGcGCGGc -3'
miRNA:   3'- -GGAAGCCgUGG-AGCuuUUgGGC-CGCC- -5'
10816 3' -55 NC_002794.1 + 16206 0.68 0.924321
Target:  5'- gCCUg-GGCACggUCG-AggUCCGGCGGg -3'
miRNA:   3'- -GGAagCCGUGg-AGCuUuuGGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 16996 0.69 0.901442
Target:  5'- cCCgucaUCGuuCACCcggCGAGAacACCCGGCGGc -3'
miRNA:   3'- -GGa---AGCc-GUGGa--GCUUU--UGGGCCGCC- -5'
10816 3' -55 NC_002794.1 + 17604 0.69 0.913327
Target:  5'- gCC-UCGGUccccACCUCGAuccccGCCgCGGCGa -3'
miRNA:   3'- -GGaAGCCG----UGGAGCUuu---UGG-GCCGCc -5'
10816 3' -55 NC_002794.1 + 17945 0.68 0.937736
Target:  5'- aCCUggCGGcCACCcgCGAcucgcccgggccguGAGCCUGGCGc -3'
miRNA:   3'- -GGAa-GCC-GUGGa-GCU--------------UUUGGGCCGCc -5'
10816 3' -55 NC_002794.1 + 18255 0.66 0.974424
Target:  5'- gCCgacCGGCgACCgCGAGAugCgCGGCGc -3'
miRNA:   3'- -GGaa-GCCG-UGGaGCUUUugG-GCCGCc -5'
10816 3' -55 NC_002794.1 + 18371 0.67 0.959372
Target:  5'- ---cCGGCGuuUCGAcu-CCCGGCGc -3'
miRNA:   3'- ggaaGCCGUggAGCUuuuGGGCCGCc -5'
10816 3' -55 NC_002794.1 + 18815 0.67 0.951924
Target:  5'- aCgggUCGGCgACCUCG---GCCgGcGCGGa -3'
miRNA:   3'- gGa--AGCCG-UGGAGCuuuUGGgC-CGCC- -5'
10816 3' -55 NC_002794.1 + 23388 0.69 0.895169
Target:  5'- ---gCGGCggAUgUCGAAGGCCCGGCu- -3'
miRNA:   3'- ggaaGCCG--UGgAGCUUUUGGGCCGcc -5'
10816 3' -55 NC_002794.1 + 23633 0.7 0.877858
Target:  5'- aCgcgCGGC-CCUCGAcccccuccgccccccGAGCgaCCGGCGGa -3'
miRNA:   3'- gGaa-GCCGuGGAGCU---------------UUUG--GGCCGCC- -5'
10816 3' -55 NC_002794.1 + 24021 0.72 0.786841
Target:  5'- aCCg-CGGCGCCUCGGcga--CGGCGGu -3'
miRNA:   3'- -GGaaGCCGUGGAGCUuuuggGCCGCC- -5'
10816 3' -55 NC_002794.1 + 24187 0.72 0.795667
Target:  5'- cCCcgCGGCACCgaGAccGAGCgCGGCGGc -3'
miRNA:   3'- -GGaaGCCGUGGagCU--UUUGgGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.