miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10816 5' -55.7 NC_002794.1 + 156943 0.66 0.965488
Target:  5'- --gCGAGucGGGGCCUCGgagaugauUGG-CCGAGGa -3'
miRNA:   3'- cagGCUU--CUCUGGAGC--------ACCaGGCUCC- -5'
10816 5' -55.7 NC_002794.1 + 19107 0.66 0.965488
Target:  5'- -aCCGAGcAGACCU--UGGaCCGAGGc -3'
miRNA:   3'- caGGCUUcUCUGGAgcACCaGGCUCC- -5'
10816 5' -55.7 NC_002794.1 + 1342 0.66 0.961576
Target:  5'- gGUCCGAAGAGacGCCUgaacggggggCGUGuuccggacaccaUCCGGGGg -3'
miRNA:   3'- -CAGGCUUCUC--UGGA----------GCACc-----------AGGCUCC- -5'
10816 5' -55.7 NC_002794.1 + 100538 0.66 0.958804
Target:  5'- -aCCGAGGAGcagcgggcgGCCUucccCGUGG-CCGAGcGg -3'
miRNA:   3'- caGGCUUCUC---------UGGA----GCACCaGGCUC-C- -5'
10816 5' -55.7 NC_002794.1 + 151390 0.66 0.951282
Target:  5'- cUCCGAGcucgaGGACCUCG-GGgaagaCGAGGa -3'
miRNA:   3'- cAGGCUUc----UCUGGAGCaCCag---GCUCC- -5'
10816 5' -55.7 NC_002794.1 + 157049 0.66 0.946777
Target:  5'- aGUCCGgcGAGACCgUCGcggagcaUGGccccgCCGAGu -3'
miRNA:   3'- -CAGGCuuCUCUGG-AGC-------ACCa----GGCUCc -5'
10816 5' -55.7 NC_002794.1 + 176897 0.67 0.942893
Target:  5'- -cUCGAGGGGACCg-GUGGgauugCCGGGu -3'
miRNA:   3'- caGGCUUCUCUGGagCACCa----GGCUCc -5'
10816 5' -55.7 NC_002794.1 + 14353 0.67 0.938366
Target:  5'- -aCCGAGGAGucuuACCgcugCGUgcugucGGUCCGAGu -3'
miRNA:   3'- caGGCUUCUC----UGGa---GCA------CCAGGCUCc -5'
10816 5' -55.7 NC_002794.1 + 101710 0.67 0.923439
Target:  5'- -cCCGAGGAcGugUUCGUGGUgCaCGuGGg -3'
miRNA:   3'- caGGCUUCU-CugGAGCACCA-G-GCuCC- -5'
10816 5' -55.7 NC_002794.1 + 143943 0.68 0.918013
Target:  5'- cGUUCGAGGAcGACUcCGUGuUCUGGGGc -3'
miRNA:   3'- -CAGGCUUCU-CUGGaGCACcAGGCUCC- -5'
10816 5' -55.7 NC_002794.1 + 90975 0.68 0.912363
Target:  5'- cUUCGgcGuGGCCUCGUaccGGgCCGAGGc -3'
miRNA:   3'- cAGGCuuCuCUGGAGCA---CCaGGCUCC- -5'
10816 5' -55.7 NC_002794.1 + 88733 0.69 0.880809
Target:  5'- -aCCucGGAuGACCUCGgGGUcgCCGAGGa -3'
miRNA:   3'- caGGcuUCU-CUGGAGCaCCA--GGCUCC- -5'
10816 5' -55.7 NC_002794.1 + 181947 0.69 0.880809
Target:  5'- -gCCGcAGAGGCaCUCGUaGaGUCCGuAGGg -3'
miRNA:   3'- caGGCuUCUCUG-GAGCA-C-CAGGC-UCC- -5'
10816 5' -55.7 NC_002794.1 + 179932 0.69 0.873858
Target:  5'- uUUCGAAGAcGACgUCGcGGgCCGGGGa -3'
miRNA:   3'- cAGGCUUCU-CUGgAGCaCCaGGCUCC- -5'
10816 5' -55.7 NC_002794.1 + 29812 0.69 0.866704
Target:  5'- cUCCGAAGcGAUCU-GUgagcaGGUCCGGGGu -3'
miRNA:   3'- cAGGCUUCuCUGGAgCA-----CCAGGCUCC- -5'
10816 5' -55.7 NC_002794.1 + 109615 0.69 0.858605
Target:  5'- uUCCGAccgacgaucucguGuGGACCUCGUGGacaUCgGAGGg -3'
miRNA:   3'- cAGGCU-------------UcUCUGGAGCACC---AGgCUCC- -5'
10816 5' -55.7 NC_002794.1 + 5305 0.7 0.836154
Target:  5'- -aCCGAucacAGAGGCCU--UGG-CCGAGGg -3'
miRNA:   3'- caGGCU----UCUCUGGAgcACCaGGCUCC- -5'
10816 5' -55.7 NC_002794.1 + 41297 0.71 0.794096
Target:  5'- cUCCGAcGcGGGCCgCGUGGggucUCCGAGGu -3'
miRNA:   3'- cAGGCUuC-UCUGGaGCACC----AGGCUCC- -5'
10816 5' -55.7 NC_002794.1 + 1812 0.73 0.690924
Target:  5'- aGUCCGAGGcacccgucGGCCUuauaCGgGGUCCGGGGg -3'
miRNA:   3'- -CAGGCUUCu-------CUGGA----GCaCCAGGCUCC- -5'
10816 5' -55.7 NC_002794.1 + 1885 0.73 0.690924
Target:  5'- aGUCCGAGGcacccgccGGCCUuauaCGgGGUCCGGGGg -3'
miRNA:   3'- -CAGGCUUCu-------CUGGA----GCaCCAGGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.