Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10816 | 5' | -55.7 | NC_002794.1 | + | 1948 | 0.73 | 0.690924 |
Target: 5'- aGUCCGAGGcgcccgccGGCCUuauaCGgGGUCCGGGGg -3' miRNA: 3'- -CAGGCUUCu-------CUGGA----GCaCCAGGCUCC- -5' |
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10816 | 5' | -55.7 | NC_002794.1 | + | 1885 | 0.73 | 0.690924 |
Target: 5'- aGUCCGAGGcacccgccGGCCUuauaCGgGGUCCGGGGg -3' miRNA: 3'- -CAGGCUUCu-------CUGGA----GCaCCAGGCUCC- -5' |
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10816 | 5' | -55.7 | NC_002794.1 | + | 1812 | 0.73 | 0.690924 |
Target: 5'- aGUCCGAGGcacccgucGGCCUuauaCGgGGUCCGGGGg -3' miRNA: 3'- -CAGGCUUCu-------CUGGA----GCaCCAGGCUCC- -5' |
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10816 | 5' | -55.7 | NC_002794.1 | + | 2010 | 0.73 | 0.690924 |
Target: 5'- aGUCCGAGGcgcccgccGGCCUuauaCGgGGUCCGGGGg -3' miRNA: 3'- -CAGGCUUCu-------CUGGA----GCaCCAGGCUCC- -5' |
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10816 | 5' | -55.7 | NC_002794.1 | + | 65098 | 1.1 | 0.004493 |
Target: 5'- gGUCCGAAGAGACCUCGUGGUCCGAGGu -3' miRNA: 3'- -CAGGCUUCUCUGGAGCACCAGGCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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