miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 3' -51.6 NC_002794.1 + 191935 0.66 0.997844
Target:  5'- gAGAGGAuCGGCGgcGAGuccuCCGACg--- -3'
miRNA:   3'- -UCUUCU-GCUGCuuCUCu---GGCUGagcc -5'
10817 3' -51.6 NC_002794.1 + 37320 0.66 0.997844
Target:  5'- cAGAAGACGgaGCGguGGGGCCcgGGCggcagcaggUCGGg -3'
miRNA:   3'- -UCUUCUGC--UGCuuCUCUGG--CUG---------AGCC- -5'
10817 3' -51.6 NC_002794.1 + 156814 0.66 0.997844
Target:  5'- gGGuAGGCGACGugccaaguAGGcACCGAC-CGGg -3'
miRNA:   3'- -UCuUCUGCUGCu-------UCUcUGGCUGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 151481 0.66 0.997807
Target:  5'- -cAGGACGACG-AGuGGCUGuacaaacgcgugcGCUCGGu -3'
miRNA:   3'- ucUUCUGCUGCuUCuCUGGC-------------UGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 58069 0.66 0.997451
Target:  5'- ---cGGCGGCGgcGGGACgGGCggccCGGc -3'
miRNA:   3'- ucuuCUGCUGCuuCUCUGgCUGa---GCC- -5'
10817 3' -51.6 NC_002794.1 + 110115 0.66 0.997451
Target:  5'- gGGggGugGAgGAAcauGGGACUgcggGACUgCGGa -3'
miRNA:   3'- -UCuuCugCUgCUU---CUCUGG----CUGA-GCC- -5'
10817 3' -51.6 NC_002794.1 + 107055 0.66 0.997451
Target:  5'- cGGAGGCGGCGGGcgcGGcgccGCCGGCaugUCGGa -3'
miRNA:   3'- uCUUCUGCUGCUUc--UC----UGGCUG---AGCC- -5'
10817 3' -51.6 NC_002794.1 + 179935 0.66 0.997451
Target:  5'- cGAAGACGACGucGcGGGCCGGggagCGa -3'
miRNA:   3'- uCUUCUGCUGCuuC-UCUGGCUga--GCc -5'
10817 3' -51.6 NC_002794.1 + 180819 0.66 0.997451
Target:  5'- cGGAcucuGGGCGGgGAGGAGcCCGGCgUCa- -3'
miRNA:   3'- -UCU----UCUGCUgCUUCUCuGGCUG-AGcc -5'
10817 3' -51.6 NC_002794.1 + 118066 0.66 0.997451
Target:  5'- cGGAAGACGGcCGAcgacaucuGGAGcacgGCCuggaACUCGGg -3'
miRNA:   3'- -UCUUCUGCU-GCU--------UCUC----UGGc---UGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 103873 0.66 0.997451
Target:  5'- gAGAGcGACGagaGCGAcGAGAgCGACgagcagCGGg -3'
miRNA:   3'- -UCUU-CUGC---UGCUuCUCUgGCUGa-----GCC- -5'
10817 3' -51.6 NC_002794.1 + 177615 0.66 0.997322
Target:  5'- cGGucGAucgcuccuCGACGAcGAGGCCGACcagcguccuggaaaUCGGa -3'
miRNA:   3'- -UCuuCU--------GCUGCUuCUCUGGCUG--------------AGCC- -5'
10817 3' -51.6 NC_002794.1 + 42657 0.66 0.997
Target:  5'- cGAAGcCGACGgcGccGCCGGCaCGGg -3'
miRNA:   3'- uCUUCuGCUGCuuCucUGGCUGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 57030 0.66 0.997
Target:  5'- aAGGAGACcuuCGAGGAGACgCucCUCGa -3'
miRNA:   3'- -UCUUCUGcu-GCUUCUCUG-GcuGAGCc -5'
10817 3' -51.6 NC_002794.1 + 181433 0.66 0.997
Target:  5'- cGAAGccguCGGCGAGG-GGCCGcC-CGGa -3'
miRNA:   3'- uCUUCu---GCUGCUUCuCUGGCuGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 149646 0.66 0.997
Target:  5'- uGGAugcGGuuCGcCGAGGAGGCCGAg-CGGg -3'
miRNA:   3'- -UCU---UCu-GCuGCUUCUCUGGCUgaGCC- -5'
10817 3' -51.6 NC_002794.1 + 102918 0.66 0.997
Target:  5'- uGGggGACGAauuuAAGAGACacgcgaGAC-CGGu -3'
miRNA:   3'- -UCuuCUGCUgc--UUCUCUGg-----CUGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 159660 0.66 0.997
Target:  5'- aAGGAGGCGACGAucuGuACCGAUaCGu -3'
miRNA:   3'- -UCUUCUGCUGCUucuC-UGGCUGaGCc -5'
10817 3' -51.6 NC_002794.1 + 56617 0.66 0.996951
Target:  5'- gAGAacuGGACGGCGgcGgaacugcuguccaAGACCGACgUCGc -3'
miRNA:   3'- -UCU---UCUGCUGCuuC-------------UCUGGCUG-AGCc -5'
10817 3' -51.6 NC_002794.1 + 177908 0.66 0.996485
Target:  5'- cGGuuuauCGGgGAGGAGGgUGGCUCGGg -3'
miRNA:   3'- -UCuucu-GCUgCUUCUCUgGCUGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.