miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 3' -51.6 NC_002794.1 + 151481 0.66 0.997807
Target:  5'- -cAGGACGACG-AGuGGCUGuacaaacgcgugcGCUCGGu -3'
miRNA:   3'- ucUUCUGCUGCuUCuCUGGC-------------UGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 103873 0.66 0.997451
Target:  5'- gAGAGcGACGagaGCGAcGAGAgCGACgagcagCGGg -3'
miRNA:   3'- -UCUU-CUGC---UGCUuCUCUgGCUGa-----GCC- -5'
10817 3' -51.6 NC_002794.1 + 118066 0.66 0.997451
Target:  5'- cGGAAGACGGcCGAcgacaucuGGAGcacgGCCuggaACUCGGg -3'
miRNA:   3'- -UCUUCUGCU-GCU--------UCUC----UGGc---UGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 180819 0.66 0.997451
Target:  5'- cGGAcucuGGGCGGgGAGGAGcCCGGCgUCa- -3'
miRNA:   3'- -UCU----UCUGCUgCUUCUCuGGCUG-AGcc -5'
10817 3' -51.6 NC_002794.1 + 179935 0.66 0.997451
Target:  5'- cGAAGACGACGucGcGGGCCGGggagCGa -3'
miRNA:   3'- uCUUCUGCUGCuuC-UCUGGCUga--GCc -5'
10817 3' -51.6 NC_002794.1 + 102918 0.66 0.997
Target:  5'- uGGggGACGAauuuAAGAGACacgcgaGAC-CGGu -3'
miRNA:   3'- -UCuuCUGCUgc--UUCUCUGg-----CUGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 159660 0.66 0.997
Target:  5'- aAGGAGGCGACGAucuGuACCGAUaCGu -3'
miRNA:   3'- -UCUUCUGCUGCUucuC-UGGCUGaGCc -5'
10817 3' -51.6 NC_002794.1 + 177615 0.66 0.997322
Target:  5'- cGGucGAucgcuccuCGACGAcGAGGCCGACcagcguccuggaaaUCGGa -3'
miRNA:   3'- -UCuuCU--------GCUGCUuCUCUGGCUG--------------AGCC- -5'
10817 3' -51.6 NC_002794.1 + 58069 0.66 0.997451
Target:  5'- ---cGGCGGCGgcGGGACgGGCggccCGGc -3'
miRNA:   3'- ucuuCUGCUGCuuCUCUGgCUGa---GCC- -5'
10817 3' -51.6 NC_002794.1 + 110115 0.66 0.997451
Target:  5'- gGGggGugGAgGAAcauGGGACUgcggGACUgCGGa -3'
miRNA:   3'- -UCuuCugCUgCUU---CUCUGG----CUGA-GCC- -5'
10817 3' -51.6 NC_002794.1 + 107055 0.66 0.997451
Target:  5'- cGGAGGCGGCGGGcgcGGcgccGCCGGCaugUCGGa -3'
miRNA:   3'- uCUUCUGCUGCUUc--UC----UGGCUG---AGCC- -5'
10817 3' -51.6 NC_002794.1 + 68820 0.67 0.994489
Target:  5'- gAGAcAGACGGCGAcGccGCCGGCgcucgCGGu -3'
miRNA:   3'- -UCU-UCUGCUGCUuCucUGGCUGa----GCC- -5'
10817 3' -51.6 NC_002794.1 + 139821 0.67 0.994489
Target:  5'- aGGAccuGGACGACGAagaccaAGAGGuuGAg-CGGg -3'
miRNA:   3'- -UCU---UCUGCUGCU------UCUCUggCUgaGCC- -5'
10817 3' -51.6 NC_002794.1 + 185395 0.67 0.994489
Target:  5'- cAGAAGACGAgGgcGcGGGCCcgaccgccgucGACUCGa -3'
miRNA:   3'- -UCUUCUGCUgCuuC-UCUGG-----------CUGAGCc -5'
10817 3' -51.6 NC_002794.1 + 90019 0.67 0.994489
Target:  5'- cGGAGAuCGACGuGGAG-UUGAgUCGGa -3'
miRNA:   3'- uCUUCU-GCUGCuUCUCuGGCUgAGCC- -5'
10817 3' -51.6 NC_002794.1 + 10295 0.67 0.995236
Target:  5'- --cAGACGACcccgucggcGAGAGACuccgaCGACUCGGc -3'
miRNA:   3'- ucuUCUGCUGc--------UUCUCUG-----GCUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 146983 0.67 0.995236
Target:  5'- cGAGGuCGGCGccGccGGCCGACgUCGGc -3'
miRNA:   3'- uCUUCuGCUGCuuCu-CUGGCUG-AGCC- -5'
10817 3' -51.6 NC_002794.1 + 144293 0.67 0.995236
Target:  5'- aAGAacccGGugGACGAGGAGgACgGGC-CGa -3'
miRNA:   3'- -UCU----UCugCUGCUUCUC-UGgCUGaGCc -5'
10817 3' -51.6 NC_002794.1 + 132722 0.67 0.995511
Target:  5'- aGGAGGAggugcaaaaugggucCGGCGGAGuGGCCGGCa--- -3'
miRNA:   3'- -UCUUCU---------------GCUGCUUCuCUGGCUGagcc -5'
10817 3' -51.6 NC_002794.1 + 179440 0.67 0.993649
Target:  5'- cGGAGGCGugGAcc--ACCGcCUCGGu -3'
miRNA:   3'- uCUUCUGCugCUucucUGGCuGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.