Results 1 - 20 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10817 | 3' | -51.6 | NC_002794.1 | + | 64900 | 1.12 | 0.008486 |
Target: 5'- aAGAAGACGACGAAGAGACCGACUCGGa -3' miRNA: 3'- -UCUUCUGCUGCUUCUCUGGCUGAGCC- -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 178795 | 0.82 | 0.442303 |
Target: 5'- gGGAAGGCGGCucggcccGggGGGACCGggcACUCGGg -3' miRNA: 3'- -UCUUCUGCUG-------CuuCUCUGGC---UGAGCC- -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 55244 | 0.81 | 0.508642 |
Target: 5'- uGAAGACGACGAGGAGgacGCCGAagagcCGGg -3' miRNA: 3'- uCUUCUGCUGCUUCUC---UGGCUga---GCC- -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 80010 | 0.8 | 0.547819 |
Target: 5'- aGGAcGGCGACGAGGAGGCCGgggagaccACUCGc -3' miRNA: 3'- -UCUuCUGCUGCUUCUCUGGC--------UGAGCc -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 72432 | 0.8 | 0.528096 |
Target: 5'- gAGGAGcCGGCGGAGGGACCGGCggCGc -3' miRNA: 3'- -UCUUCuGCUGCUUCUCUGGCUGa-GCc -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 149848 | 0.79 | 0.618305 |
Target: 5'- cGAGGACgggGACGAGGAGcgGCCGcccGCUCGGg -3' miRNA: 3'- uCUUCUG---CUGCUUCUC--UGGC---UGAGCC- -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 191882 | 0.78 | 0.63254 |
Target: 5'- gAGggGGCGGCGGAGgcgggaucggcaccgGGACCGGCugaaUCGGc -3' miRNA: 3'- -UCuuCUGCUGCUUC---------------UCUGGCUG----AGCC- -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 89333 | 0.77 | 0.69927 |
Target: 5'- cGggGACGcgGCGgcGAGACCuccgagGACUCGGu -3' miRNA: 3'- uCuuCUGC--UGCuuCUCUGG------CUGAGCC- -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 146678 | 0.77 | 0.689254 |
Target: 5'- aGGAGGACGucuCGGcgcucGAGGCCGACUgCGGg -3' miRNA: 3'- -UCUUCUGCu--GCUu----CUCUGGCUGA-GCC- -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 43327 | 0.76 | 0.752167 |
Target: 5'- cGAAGACGACcacgcagcgccgguuGAAguccGAGugCGGCUCGGa -3' miRNA: 3'- uCUUCUGCUG---------------CUU----CUCugGCUGAGCC- -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 142241 | 0.75 | 0.821143 |
Target: 5'- cGGAGGCGGCGguGAGACgGACg-GGa -3' miRNA: 3'- uCUUCUGCUGCuuCUCUGgCUGagCC- -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 44340 | 0.75 | 0.821143 |
Target: 5'- aAGAAGACGGCGccggcGAGACCGagaGCgcggCGGg -3' miRNA: 3'- -UCUUCUGCUGCuu---CUCUGGC---UGa---GCC- -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 100362 | 0.75 | 0.776638 |
Target: 5'- uGGAGGugGacuGCGAGGuGGCCGACguccgCGGc -3' miRNA: 3'- -UCUUCugC---UGCUUCuCUGGCUGa----GCC- -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 141826 | 0.75 | 0.803793 |
Target: 5'- uGGAcGACGACGAGcGGAUCG-CUCGGc -3' miRNA: 3'- -UCUuCUGCUGCUUcUCUGGCuGAGCC- -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 14240 | 0.75 | 0.794884 |
Target: 5'- cAGAGGA-GACGGAGAccGCCGGCUCGa -3' miRNA: 3'- -UCUUCUgCUGCUUCUc-UGGCUGAGCc -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 120048 | 0.74 | 0.829568 |
Target: 5'- uGAcGGCGGCGGuggcggccgcGGAGGCCGACgcggCGGu -3' miRNA: 3'- uCUuCUGCUGCU----------UCUCUGGCUGa---GCC- -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 21630 | 0.74 | 0.853748 |
Target: 5'- gGGAGGACGACGAGGaAGAagaCGAagaagCGGc -3' miRNA: 3'- -UCUUCUGCUGCUUC-UCUg--GCUga---GCC- -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 178236 | 0.74 | 0.843478 |
Target: 5'- cGGAugGGACGACGAGGccgucgagggaagcGGGCUGAC-CGGa -3' miRNA: 3'- -UCU--UCUGCUGCUUC--------------UCUGGCUGaGCC- -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 112322 | 0.74 | 0.837815 |
Target: 5'- cGccGACGGCGggGAGcgcGCCGGC-CGGc -3' miRNA: 3'- uCuuCUGCUGCuuCUC---UGGCUGaGCC- -5' |
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10817 | 3' | -51.6 | NC_002794.1 | + | 142355 | 0.74 | 0.853748 |
Target: 5'- cGGAGGCGGCGGAGGcGGCgGAggCGGa -3' miRNA: 3'- uCUUCUGCUGCUUCU-CUGgCUgaGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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