miRNA display CGI


Results 1 - 20 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 3' -51.6 NC_002794.1 + 64900 1.12 0.008486
Target:  5'- aAGAAGACGACGAAGAGACCGACUCGGa -3'
miRNA:   3'- -UCUUCUGCUGCUUCUCUGGCUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 178795 0.82 0.442303
Target:  5'- gGGAAGGCGGCucggcccGggGGGACCGggcACUCGGg -3'
miRNA:   3'- -UCUUCUGCUG-------CuuCUCUGGC---UGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 55244 0.81 0.508642
Target:  5'- uGAAGACGACGAGGAGgacGCCGAagagcCGGg -3'
miRNA:   3'- uCUUCUGCUGCUUCUC---UGGCUga---GCC- -5'
10817 3' -51.6 NC_002794.1 + 72432 0.8 0.528096
Target:  5'- gAGGAGcCGGCGGAGGGACCGGCggCGc -3'
miRNA:   3'- -UCUUCuGCUGCUUCUCUGGCUGa-GCc -5'
10817 3' -51.6 NC_002794.1 + 80010 0.8 0.547819
Target:  5'- aGGAcGGCGACGAGGAGGCCGgggagaccACUCGc -3'
miRNA:   3'- -UCUuCUGCUGCUUCUCUGGC--------UGAGCc -5'
10817 3' -51.6 NC_002794.1 + 149848 0.79 0.618305
Target:  5'- cGAGGACgggGACGAGGAGcgGCCGcccGCUCGGg -3'
miRNA:   3'- uCUUCUG---CUGCUUCUC--UGGC---UGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 191882 0.78 0.63254
Target:  5'- gAGggGGCGGCGGAGgcgggaucggcaccgGGACCGGCugaaUCGGc -3'
miRNA:   3'- -UCuuCUGCUGCUUC---------------UCUGGCUG----AGCC- -5'
10817 3' -51.6 NC_002794.1 + 146678 0.77 0.689254
Target:  5'- aGGAGGACGucuCGGcgcucGAGGCCGACUgCGGg -3'
miRNA:   3'- -UCUUCUGCu--GCUu----CUCUGGCUGA-GCC- -5'
10817 3' -51.6 NC_002794.1 + 89333 0.77 0.69927
Target:  5'- cGggGACGcgGCGgcGAGACCuccgagGACUCGGu -3'
miRNA:   3'- uCuuCUGC--UGCuuCUCUGG------CUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 43327 0.76 0.752167
Target:  5'- cGAAGACGACcacgcagcgccgguuGAAguccGAGugCGGCUCGGa -3'
miRNA:   3'- uCUUCUGCUG---------------CUU----CUCugGCUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 100362 0.75 0.776638
Target:  5'- uGGAGGugGacuGCGAGGuGGCCGACguccgCGGc -3'
miRNA:   3'- -UCUUCugC---UGCUUCuCUGGCUGa----GCC- -5'
10817 3' -51.6 NC_002794.1 + 14240 0.75 0.794884
Target:  5'- cAGAGGA-GACGGAGAccGCCGGCUCGa -3'
miRNA:   3'- -UCUUCUgCUGCUUCUc-UGGCUGAGCc -5'
10817 3' -51.6 NC_002794.1 + 141826 0.75 0.803793
Target:  5'- uGGAcGACGACGAGcGGAUCG-CUCGGc -3'
miRNA:   3'- -UCUuCUGCUGCUUcUCUGGCuGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 44340 0.75 0.821143
Target:  5'- aAGAAGACGGCGccggcGAGACCGagaGCgcggCGGg -3'
miRNA:   3'- -UCUUCUGCUGCuu---CUCUGGC---UGa---GCC- -5'
10817 3' -51.6 NC_002794.1 + 142241 0.75 0.821143
Target:  5'- cGGAGGCGGCGguGAGACgGACg-GGa -3'
miRNA:   3'- uCUUCUGCUGCuuCUCUGgCUGagCC- -5'
10817 3' -51.6 NC_002794.1 + 120048 0.74 0.829568
Target:  5'- uGAcGGCGGCGGuggcggccgcGGAGGCCGACgcggCGGu -3'
miRNA:   3'- uCUuCUGCUGCU----------UCUCUGGCUGa---GCC- -5'
10817 3' -51.6 NC_002794.1 + 112322 0.74 0.837815
Target:  5'- cGccGACGGCGggGAGcgcGCCGGC-CGGc -3'
miRNA:   3'- uCuuCUGCUGCuuCUC---UGGCUGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 178236 0.74 0.843478
Target:  5'- cGGAugGGACGACGAGGccgucgagggaagcGGGCUGAC-CGGa -3'
miRNA:   3'- -UCU--UCUGCUGCUUC--------------UCUGGCUGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 21630 0.74 0.853748
Target:  5'- gGGAGGACGACGAGGaAGAagaCGAagaagCGGc -3'
miRNA:   3'- -UCUUCUGCUGCUUC-UCUg--GCUga---GCC- -5'
10817 3' -51.6 NC_002794.1 + 142355 0.74 0.853748
Target:  5'- cGGAGGCGGCGGAGGcGGCgGAggCGGa -3'
miRNA:   3'- uCUUCUGCUGCUUCU-CUGgCUgaGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.