miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 3' -51.6 NC_002794.1 + 79435 0.73 0.890015
Target:  5'- cGgcGGCGGCGgcGGcGACCGGCgCGGa -3'
miRNA:   3'- uCuuCUGCUGCuuCU-CUGGCUGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 128091 0.73 0.890015
Target:  5'- gAGucGGCGACGggGAGcUCGACggGGg -3'
miRNA:   3'- -UCuuCUGCUGCuuCUCuGGCUGagCC- -5'
10817 3' -51.6 NC_002794.1 + 107593 0.73 0.896614
Target:  5'- gAGAAGACGGCgGggGAGACggggaaGACggGGa -3'
miRNA:   3'- -UCUUCUGCUG-CuuCUCUGg-----CUGagCC- -5'
10817 3' -51.6 NC_002794.1 + 107564 0.72 0.902986
Target:  5'- uGGggGAgGAgGAGGAGGCgGAgaCGGc -3'
miRNA:   3'- -UCuuCUgCUgCUUCUCUGgCUgaGCC- -5'
10817 3' -51.6 NC_002794.1 + 19499 0.72 0.902986
Target:  5'- cGAcGACGGCGGAGGucgcGCCG-CUCGGa -3'
miRNA:   3'- uCUuCUGCUGCUUCUc---UGGCuGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 145910 0.72 0.902986
Target:  5'- gGGGAGuCGaccgcgccgaGCGGAGGGGCCGGCgagagCGGu -3'
miRNA:   3'- -UCUUCuGC----------UGCUUCUCUGGCUGa----GCC- -5'
10817 3' -51.6 NC_002794.1 + 116452 0.72 0.902986
Target:  5'- uGgcGAUGACGAAGAGcgGCCGGuuCUUGGu -3'
miRNA:   3'- uCuuCUGCUGCUUCUC--UGGCU--GAGCC- -5'
10817 3' -51.6 NC_002794.1 + 35886 0.72 0.915035
Target:  5'- gAGAGGcCGuCGGacacAGAGACCccgaGACUCGGa -3'
miRNA:   3'- -UCUUCuGCuGCU----UCUCUGG----CUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 107880 0.72 0.920709
Target:  5'- cGGAGGCGGCGcggcGGGugCGGCUgcCGGg -3'
miRNA:   3'- uCUUCUGCUGCuu--CUCugGCUGA--GCC- -5'
10817 3' -51.6 NC_002794.1 + 36978 0.72 0.926147
Target:  5'- aGGAGGAucgcgcgcagguCGGCGAGGcggacccgguAGAgCGGCUCGGg -3'
miRNA:   3'- -UCUUCU------------GCUGCUUC----------UCUgGCUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 138397 0.72 0.926147
Target:  5'- cAGAAGGCGuCGAGGucgucgccGGccGCCGACUCGu -3'
miRNA:   3'- -UCUUCUGCuGCUUC--------UC--UGGCUGAGCc -5'
10817 3' -51.6 NC_002794.1 + 146613 0.72 0.926147
Target:  5'- cGAAGGCGGCGAGGAcgUCGAaggCGGu -3'
miRNA:   3'- uCUUCUGCUGCUUCUcuGGCUga-GCC- -5'
10817 3' -51.6 NC_002794.1 + 129882 0.71 0.931349
Target:  5'- gAGAAGugGACGcGGGAGAgCGAa-CGGc -3'
miRNA:   3'- -UCUUCugCUGC-UUCUCUgGCUgaGCC- -5'
10817 3' -51.6 NC_002794.1 + 129197 0.71 0.941047
Target:  5'- gGGucGACGACcGAGcGGCCGACggCGGu -3'
miRNA:   3'- -UCuuCUGCUGcUUCuCUGGCUGa-GCC- -5'
10817 3' -51.6 NC_002794.1 + 95853 0.71 0.945544
Target:  5'- gGGGAGGCGGCGGGcGGGCCGuuUCa- -3'
miRNA:   3'- -UCUUCUGCUGCUUcUCUGGCugAGcc -5'
10817 3' -51.6 NC_002794.1 + 115961 0.71 0.94981
Target:  5'- cGggGAcCGugGggGGGAgCGGgaCGGg -3'
miRNA:   3'- uCuuCU-GCugCuuCUCUgGCUgaGCC- -5'
10817 3' -51.6 NC_002794.1 + 145607 0.71 0.94981
Target:  5'- cGGAGucgggcGCGACGAGGAGcUCGGCcCGGa -3'
miRNA:   3'- uCUUC------UGCUGCUUCUCuGGCUGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 14628 0.7 0.953848
Target:  5'- cGGAGACGgggccgggcACGGAGAcGCCGGCgccgCGGc -3'
miRNA:   3'- uCUUCUGC---------UGCUUCUcUGGCUGa---GCC- -5'
10817 3' -51.6 NC_002794.1 + 138706 0.7 0.953848
Target:  5'- uGAGGGCGGCGuGGAcucgcgucGAgCCGGCUCGa -3'
miRNA:   3'- uCUUCUGCUGCuUCU--------CU-GGCUGAGCc -5'
10817 3' -51.6 NC_002794.1 + 51253 0.7 0.957661
Target:  5'- uAGAAGGCGugGggGcGGGCCGGga-GGc -3'
miRNA:   3'- -UCUUCUGCugCuuC-UCUGGCUgagCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.