miRNA display CGI


Results 21 - 40 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 3' -51.6 NC_002794.1 + 42590 0.66 0.996485
Target:  5'- cGGAGGAgGGCGcGGcGGCCGGgagCGGg -3'
miRNA:   3'- -UCUUCUgCUGCuUCuCUGGCUga-GCC- -5'
10817 3' -51.6 NC_002794.1 + 142391 0.66 0.996485
Target:  5'- cGGAGACGGCGguGcAGG-CGGCgUCGGc -3'
miRNA:   3'- uCUUCUGCUGCuuC-UCUgGCUG-AGCC- -5'
10817 3' -51.6 NC_002794.1 + 57615 0.66 0.996485
Target:  5'- gAGAAGGCGGcCGAcGAccuGGCCGACcCGc -3'
miRNA:   3'- -UCUUCUGCU-GCUuCU---CUGGCUGaGCc -5'
10817 3' -51.6 NC_002794.1 + 177908 0.66 0.996485
Target:  5'- cGGuuuauCGGgGAGGAGGgUGGCUCGGg -3'
miRNA:   3'- -UCuucu-GCUgCUUCUCUgGCUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 145498 0.66 0.996485
Target:  5'- aGGAugAGGCGuGCGAAggggugcgcGAGGCCGGCccgagcgccUCGGg -3'
miRNA:   3'- -UCU--UCUGC-UGCUU---------CUCUGGCUG---------AGCC- -5'
10817 3' -51.6 NC_002794.1 + 39323 0.66 0.99643
Target:  5'- -cAAGACGGCGAuuuuaaauaugacGGAGugCGcGCUgGGc -3'
miRNA:   3'- ucUUCUGCUGCU-------------UCUCugGC-UGAgCC- -5'
10817 3' -51.6 NC_002794.1 + 67957 0.66 0.995899
Target:  5'- cGAGGACGGCGGGcccAGACgGG-UCGGu -3'
miRNA:   3'- uCUUCUGCUGCUUc--UCUGgCUgAGCC- -5'
10817 3' -51.6 NC_002794.1 + 126680 0.66 0.995899
Target:  5'- cGAGGGCccgaauCGggGAGggaggggcgccGCgGACUCGGg -3'
miRNA:   3'- uCUUCUGcu----GCuuCUC-----------UGgCUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 144611 0.66 0.995899
Target:  5'- aAGcAGACgGugGAGGAGAUgGGCaaGGg -3'
miRNA:   3'- -UCuUCUG-CugCUUCUCUGgCUGagCC- -5'
10817 3' -51.6 NC_002794.1 + 100823 0.66 0.995899
Target:  5'- --cGGGCGGCG--GGGGCCGGCagcCGGg -3'
miRNA:   3'- ucuUCUGCUGCuuCUCUGGCUGa--GCC- -5'
10817 3' -51.6 NC_002794.1 + 94061 0.66 0.995837
Target:  5'- cGggGGCGGCGggGGGcgagggcACCuacGACcugUCGGc -3'
miRNA:   3'- uCuuCUGCUGCuuCUC-------UGG---CUG---AGCC- -5'
10817 3' -51.6 NC_002794.1 + 132722 0.67 0.995511
Target:  5'- aGGAGGAggugcaaaaugggucCGGCGGAGuGGCCGGCa--- -3'
miRNA:   3'- -UCUUCU---------------GCUGCUUCuCUGGCUGagcc -5'
10817 3' -51.6 NC_002794.1 + 10295 0.67 0.995236
Target:  5'- --cAGACGACcccgucggcGAGAGACuccgaCGACUCGGc -3'
miRNA:   3'- ucuUCUGCUGc--------UUCUCUG-----GCUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 146983 0.67 0.995236
Target:  5'- cGAGGuCGGCGccGccGGCCGACgUCGGc -3'
miRNA:   3'- uCUUCuGCUGCuuCu-CUGGCUG-AGCC- -5'
10817 3' -51.6 NC_002794.1 + 144293 0.67 0.995236
Target:  5'- aAGAacccGGugGACGAGGAGgACgGGC-CGa -3'
miRNA:   3'- -UCU----UCugCUGCUUCUC-UGgCUGaGCc -5'
10817 3' -51.6 NC_002794.1 + 149745 0.67 0.995236
Target:  5'- --cGGugGAgCGgcGGGACCGcuguCUCGGc -3'
miRNA:   3'- ucuUCugCU-GCuuCUCUGGCu---GAGCC- -5'
10817 3' -51.6 NC_002794.1 + 90019 0.67 0.994489
Target:  5'- cGGAGAuCGACGuGGAG-UUGAgUCGGa -3'
miRNA:   3'- uCUUCU-GCUGCuUCUCuGGCUgAGCC- -5'
10817 3' -51.6 NC_002794.1 + 185395 0.67 0.994489
Target:  5'- cAGAAGACGAgGgcGcGGGCCcgaccgccgucGACUCGa -3'
miRNA:   3'- -UCUUCUGCUgCuuC-UCUGG-----------CUGAGCc -5'
10817 3' -51.6 NC_002794.1 + 139821 0.67 0.994489
Target:  5'- aGGAccuGGACGACGAagaccaAGAGGuuGAg-CGGg -3'
miRNA:   3'- -UCU---UCUGCUGCU------UCUCUggCUgaGCC- -5'
10817 3' -51.6 NC_002794.1 + 68820 0.67 0.994489
Target:  5'- gAGAcAGACGGCGAcGccGCCGGCgcucgCGGu -3'
miRNA:   3'- -UCU-UCUGCUGCUuCucUGGCUGa----GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.