miRNA display CGI


Results 41 - 60 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 3' -51.6 NC_002794.1 + 128337 0.67 0.994489
Target:  5'- cGGAcgcGGugGACuGAGcAG-UCGACUCGGa -3'
miRNA:   3'- -UCU---UCugCUGcUUC-UCuGGCUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 185481 0.67 0.994409
Target:  5'- cGGccGCGGCGAGGGGACCGccuauauAUUCGa -3'
miRNA:   3'- uCUucUGCUGCUUCUCUGGC-------UGAGCc -5'
10817 3' -51.6 NC_002794.1 + 32640 0.67 0.993649
Target:  5'- aGGggGGCGACGAccGGGgCGACggCGc -3'
miRNA:   3'- -UCuuCUGCUGCUucUCUgGCUGa-GCc -5'
10817 3' -51.6 NC_002794.1 + 150599 0.67 0.993649
Target:  5'- cGAGGACGGCc--GGGcGCCGGCUCu- -3'
miRNA:   3'- uCUUCUGCUGcuuCUC-UGGCUGAGcc -5'
10817 3' -51.6 NC_002794.1 + 179440 0.67 0.993649
Target:  5'- cGGAGGCGugGAcc--ACCGcCUCGGu -3'
miRNA:   3'- uCUUCUGCugCUucucUGGCuGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 8118 0.67 0.99356
Target:  5'- gAGcGGGCGGCGGccuccucGGuGACCGGCgaCGGc -3'
miRNA:   3'- -UCuUCUGCUGCU-------UCuCUGGCUGa-GCC- -5'
10817 3' -51.6 NC_002794.1 + 63697 0.67 0.99271
Target:  5'- cGAuGACGACGAcGGcGCCGGCgccgcCGGa -3'
miRNA:   3'- uCUuCUGCUGCUuCUcUGGCUGa----GCC- -5'
10817 3' -51.6 NC_002794.1 + 180869 0.67 0.99261
Target:  5'- cGGAGGCGGCGGauccggcgcgcccGGucucGGCCGcggACUCGGc -3'
miRNA:   3'- uCUUCUGCUGCU-------------UCu---CUGGC---UGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 89206 0.67 0.992407
Target:  5'- aGGGuuuaGCGGCGAAGGGAgCCGcccgugcacauugaACUCGGc -3'
miRNA:   3'- -UCUuc--UGCUGCUUCUCU-GGC--------------UGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 142154 0.67 0.991663
Target:  5'- cGGAGGCGGCGGu-AGcACCGGCagcgUCGGc -3'
miRNA:   3'- uCUUCUGCUGCUucUC-UGGCUG----AGCC- -5'
10817 3' -51.6 NC_002794.1 + 21922 0.68 0.9905
Target:  5'- cGGAGACGACGgcGGcGGCgCGgcGCUCGu -3'
miRNA:   3'- uCUUCUGCUGCuuCU-CUG-GC--UGAGCc -5'
10817 3' -51.6 NC_002794.1 + 105804 0.68 0.9905
Target:  5'- cGGAGACGGacCGAAagcGcGACCGGgUCGGu -3'
miRNA:   3'- uCUUCUGCU--GCUU---CuCUGGCUgAGCC- -5'
10817 3' -51.6 NC_002794.1 + 107916 0.68 0.9905
Target:  5'- gGGAAGuguguuggacgcGCGuCGAAGAGcgGCUGGCUCGc -3'
miRNA:   3'- -UCUUC------------UGCuGCUUCUC--UGGCUGAGCc -5'
10817 3' -51.6 NC_002794.1 + 118269 0.68 0.9905
Target:  5'- -cGGGGCGGCGGcgccggcgucGGGGACCGcGC-CGGg -3'
miRNA:   3'- ucUUCUGCUGCU----------UCUCUGGC-UGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 127920 0.68 0.9905
Target:  5'- gAGggGGCGGgGAuucGGGgCGugUCGGu -3'
miRNA:   3'- -UCuuCUGCUgCUuc-UCUgGCugAGCC- -5'
10817 3' -51.6 NC_002794.1 + 136148 0.68 0.9905
Target:  5'- cGAGGACGgggGCGAAGAGGaaGuCUuCGGu -3'
miRNA:   3'- uCUUCUGC---UGCUUCUCUggCuGA-GCC- -5'
10817 3' -51.6 NC_002794.1 + 129135 0.68 0.9905
Target:  5'- uGGAAcGGCG-CGucGAGACUGugUCGcGg -3'
miRNA:   3'- -UCUU-CUGCuGCuuCUCUGGCugAGC-C- -5'
10817 3' -51.6 NC_002794.1 + 153799 0.68 0.9905
Target:  5'- cGGAuGAgGACG-AGAG-CCGGCcCGGa -3'
miRNA:   3'- -UCUuCUgCUGCuUCUCuGGCUGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 55283 0.68 0.989214
Target:  5'- cGguGGCGGCGAcGAGGgCGGCggCGGc -3'
miRNA:   3'- uCuuCUGCUGCUuCUCUgGCUGa-GCC- -5'
10817 3' -51.6 NC_002794.1 + 114003 0.68 0.989214
Target:  5'- -cGAGGCGcCGGAG-GAgCGACUCGu -3'
miRNA:   3'- ucUUCUGCuGCUUCuCUgGCUGAGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.