miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 3' -51.6 NC_002794.1 + 6811 0.68 0.989078
Target:  5'- uGggGGCcauguccacccagGACGAAGAGaaccccggGCCGGC-CGGa -3'
miRNA:   3'- uCuuCUG-------------CUGCUUCUC--------UGGCUGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 7815 0.7 0.964627
Target:  5'- uGAGGAUGAgcgggaGggGGGGCCGuccaUCGGg -3'
miRNA:   3'- uCUUCUGCUg-----CuuCUCUGGCug--AGCC- -5'
10817 3' -51.6 NC_002794.1 + 8118 0.67 0.99356
Target:  5'- gAGcGGGCGGCGGccuccucGGuGACCGGCgaCGGc -3'
miRNA:   3'- -UCuUCUGCUGCU-------UCuCUGGCUGa-GCC- -5'
10817 3' -51.6 NC_002794.1 + 9746 0.66 0.996485
Target:  5'- gGGuAGGugGGgGggGggucAGACCGACccCGGg -3'
miRNA:   3'- -UC-UUCugCUgCuuC----UCUGGCUGa-GCC- -5'
10817 3' -51.6 NC_002794.1 + 10295 0.67 0.995236
Target:  5'- --cAGACGACcccgucggcGAGAGACuccgaCGACUCGGc -3'
miRNA:   3'- ucuUCUGCUGc--------UUCUCUG-----GCUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 14240 0.75 0.794884
Target:  5'- cAGAGGA-GACGGAGAccGCCGGCUCGa -3'
miRNA:   3'- -UCUUCUgCUGCUUCUc-UGGCUGAGCc -5'
10817 3' -51.6 NC_002794.1 + 14628 0.7 0.953848
Target:  5'- cGGAGACGgggccgggcACGGAGAcGCCGGCgccgCGGc -3'
miRNA:   3'- uCUUCUGC---------UGCUUCUcUGGCUGa---GCC- -5'
10817 3' -51.6 NC_002794.1 + 14702 0.69 0.981475
Target:  5'- ---uGACGGCGuGGGGAgcgcugcucgcggcuUCGGCUCGGg -3'
miRNA:   3'- ucuuCUGCUGCuUCUCU---------------GGCUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 19464 0.69 0.973504
Target:  5'- cGgcGGCGGCGgcGGGACCcGC-CGGu -3'
miRNA:   3'- uCuuCUGCUGCuuCUCUGGcUGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 19499 0.72 0.902986
Target:  5'- cGAcGACGGCGGAGGucgcGCCG-CUCGGa -3'
miRNA:   3'- uCUuCUGCUGCUUCUc---UGGCuGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 21519 0.7 0.961252
Target:  5'- cGAGGACgGGCGGAucGGGAUCGGCUagcucCGGa -3'
miRNA:   3'- uCUUCUG-CUGCUU--CUCUGGCUGA-----GCC- -5'
10817 3' -51.6 NC_002794.1 + 21630 0.74 0.853748
Target:  5'- gGGAGGACGACGAGGaAGAagaCGAagaagCGGc -3'
miRNA:   3'- -UCUUCUGCUGCUUC-UCUg--GCUga---GCC- -5'
10817 3' -51.6 NC_002794.1 + 21922 0.68 0.9905
Target:  5'- cGGAGACGACGgcGGcGGCgCGgcGCUCGu -3'
miRNA:   3'- uCUUCUGCUGCuuCU-CUG-GC--UGAGCc -5'
10817 3' -51.6 NC_002794.1 + 32640 0.67 0.993649
Target:  5'- aGGggGGCGACGAccGGGgCGACggCGc -3'
miRNA:   3'- -UCuuCUGCUGCUucUCUgGCUGa-GCc -5'
10817 3' -51.6 NC_002794.1 + 35886 0.72 0.915035
Target:  5'- gAGAGGcCGuCGGacacAGAGACCccgaGACUCGGa -3'
miRNA:   3'- -UCUUCuGCuGCU----UCUCUGG----CUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 36978 0.72 0.926147
Target:  5'- aGGAGGAucgcgcgcagguCGGCGAGGcggacccgguAGAgCGGCUCGGg -3'
miRNA:   3'- -UCUUCU------------GCUGCUUC----------UCUgGCUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 37320 0.66 0.997844
Target:  5'- cAGAAGACGgaGCGguGGGGCCcgGGCggcagcaggUCGGg -3'
miRNA:   3'- -UCUUCUGC--UGCuuCUCUGG--CUG---------AGCC- -5'
10817 3' -51.6 NC_002794.1 + 39323 0.66 0.99643
Target:  5'- -cAAGACGGCGAuuuuaaauaugacGGAGugCGcGCUgGGc -3'
miRNA:   3'- ucUUCUGCUGCU-------------UCUCugGC-UGAgCC- -5'
10817 3' -51.6 NC_002794.1 + 40533 0.68 0.989214
Target:  5'- cGAcgGGA-GACGAGGGGGCCGGCg--- -3'
miRNA:   3'- uCU--UCUgCUGCUUCUCUGGCUGagcc -5'
10817 3' -51.6 NC_002794.1 + 42590 0.66 0.996485
Target:  5'- cGGAGGAgGGCGcGGcGGCCGGgagCGGg -3'
miRNA:   3'- -UCUUCUgCUGCuUCuCUGGCUga-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.