miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 3' -51.6 NC_002794.1 + 42657 0.66 0.997
Target:  5'- cGAAGcCGACGgcGccGCCGGCaCGGg -3'
miRNA:   3'- uCUUCuGCUGCuuCucUGGCUGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 43327 0.76 0.752167
Target:  5'- cGAAGACGACcacgcagcgccgguuGAAguccGAGugCGGCUCGGa -3'
miRNA:   3'- uCUUCUGCUG---------------CUU----CUCugGCUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 44275 0.68 0.984532
Target:  5'- cGggGACGGaGGAGuccgcgcccgccGGGCCGGCgaggCGGg -3'
miRNA:   3'- uCuuCUGCUgCUUC------------UCUGGCUGa---GCC- -5'
10817 3' -51.6 NC_002794.1 + 44340 0.75 0.821143
Target:  5'- aAGAAGACGGCGccggcGAGACCGagaGCgcggCGGg -3'
miRNA:   3'- -UCUUCUGCUGCuu---CUCUGGC---UGa---GCC- -5'
10817 3' -51.6 NC_002794.1 + 50767 0.68 0.989214
Target:  5'- --cGGGCGGCGgcGAcGGCgCGuCUCGGg -3'
miRNA:   3'- ucuUCUGCUGCuuCU-CUG-GCuGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 51253 0.7 0.957661
Target:  5'- uAGAAGGCGugGggGcGGGCCGGga-GGc -3'
miRNA:   3'- -UCUUCUGCugCuuC-UCUGGCUgagCC- -5'
10817 3' -51.6 NC_002794.1 + 55244 0.81 0.508642
Target:  5'- uGAAGACGACGAGGAGgacGCCGAagagcCGGg -3'
miRNA:   3'- uCUUCUGCUGCUUCUC---UGGCUga---GCC- -5'
10817 3' -51.6 NC_002794.1 + 55283 0.68 0.989214
Target:  5'- cGguGGCGGCGAcGAGGgCGGCggCGGc -3'
miRNA:   3'- uCuuCUGCUGCUuCUCUgGCUGa-GCC- -5'
10817 3' -51.6 NC_002794.1 + 55355 0.68 0.989214
Target:  5'- -cGAGGCGGcCGAGGcGGCCGAggCGGc -3'
miRNA:   3'- ucUUCUGCU-GCUUCuCUGGCUgaGCC- -5'
10817 3' -51.6 NC_002794.1 + 55382 0.68 0.989214
Target:  5'- -cGAGGCGGcCGAGGcGGCCGAggCGGc -3'
miRNA:   3'- ucUUCUGCU-GCUUCuCUGGCUgaGCC- -5'
10817 3' -51.6 NC_002794.1 + 56617 0.66 0.996951
Target:  5'- gAGAacuGGACGGCGgcGgaacugcuguccaAGACCGACgUCGc -3'
miRNA:   3'- -UCU---UCUGCUGCuuC-------------UCUGGCUG-AGCc -5'
10817 3' -51.6 NC_002794.1 + 57030 0.66 0.997
Target:  5'- aAGGAGACcuuCGAGGAGACgCucCUCGa -3'
miRNA:   3'- -UCUUCUGcu-GCUUCUCUG-GcuGAGCc -5'
10817 3' -51.6 NC_002794.1 + 57615 0.66 0.996485
Target:  5'- gAGAAGGCGGcCGAcGAccuGGCCGACcCGc -3'
miRNA:   3'- -UCUUCUGCU-GCUuCU---CUGGCUGaGCc -5'
10817 3' -51.6 NC_002794.1 + 58069 0.66 0.997451
Target:  5'- ---cGGCGGCGgcGGGACgGGCggccCGGc -3'
miRNA:   3'- ucuuCUGCUGCuuCUCUGgCUGa---GCC- -5'
10817 3' -51.6 NC_002794.1 + 63697 0.67 0.99271
Target:  5'- cGAuGACGACGAcGGcGCCGGCgccgcCGGa -3'
miRNA:   3'- uCUuCUGCUGCUuCUcUGGCUGa----GCC- -5'
10817 3' -51.6 NC_002794.1 + 64815 0.7 0.964627
Target:  5'- cGcGGACGGCGgcGAGccggcGCCGACgacCGGa -3'
miRNA:   3'- uCuUCUGCUGCuuCUC-----UGGCUGa--GCC- -5'
10817 3' -51.6 NC_002794.1 + 64900 1.12 0.008486
Target:  5'- aAGAAGACGACGAAGAGACCGACUCGGa -3'
miRNA:   3'- -UCUUCUGCUGCUUCUCUGGCUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 67957 0.66 0.995899
Target:  5'- cGAGGACGGCGGGcccAGACgGG-UCGGu -3'
miRNA:   3'- uCUUCUGCUGCUUc--UCUGgCUgAGCC- -5'
10817 3' -51.6 NC_002794.1 + 68820 0.67 0.994489
Target:  5'- gAGAcAGACGGCGAcGccGCCGGCgcucgCGGu -3'
miRNA:   3'- -UCU-UCUGCUGCUuCucUGGCUGa----GCC- -5'
10817 3' -51.6 NC_002794.1 + 69765 0.7 0.96779
Target:  5'- gGGAuGGCGACGAAGAucCCGACg--- -3'
miRNA:   3'- -UCUuCUGCUGCUUCUcuGGCUGagcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.