miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 3' -51.6 NC_002794.1 + 192216 0.68 0.987796
Target:  5'- cGAAGagcGCGACGAAGAaGAUCGGCg--- -3'
miRNA:   3'- uCUUC---UGCUGCUUCU-CUGGCUGagcc -5'
10817 3' -51.6 NC_002794.1 + 191935 0.66 0.997844
Target:  5'- gAGAGGAuCGGCGgcGAGuccuCCGACg--- -3'
miRNA:   3'- -UCUUCU-GCUGCuuCUCu---GGCUGagcc -5'
10817 3' -51.6 NC_002794.1 + 191882 0.78 0.63254
Target:  5'- gAGggGGCGGCGGAGgcgggaucggcaccgGGACCGGCugaaUCGGc -3'
miRNA:   3'- -UCuuCUGCUGCUUC---------------UCUGGCUG----AGCC- -5'
10817 3' -51.6 NC_002794.1 + 185623 0.69 0.980644
Target:  5'- cGAGcGACGGCGAGcGAGACuCGAgCggCGGa -3'
miRNA:   3'- uCUU-CUGCUGCUU-CUCUG-GCU-Ga-GCC- -5'
10817 3' -51.6 NC_002794.1 + 185481 0.67 0.994409
Target:  5'- cGGccGCGGCGAGGGGACCGccuauauAUUCGa -3'
miRNA:   3'- uCUucUGCUGCUUCUCUGGC-------UGAGCc -5'
10817 3' -51.6 NC_002794.1 + 185395 0.67 0.994489
Target:  5'- cAGAAGACGAgGgcGcGGGCCcgaccgccgucGACUCGa -3'
miRNA:   3'- -UCUUCUGCUgCuuC-UCUGG-----------CUGAGCc -5'
10817 3' -51.6 NC_002794.1 + 181433 0.66 0.997
Target:  5'- cGAAGccguCGGCGAGG-GGCCGcC-CGGa -3'
miRNA:   3'- uCUUCu---GCUGCUUCuCUGGCuGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 180869 0.67 0.99261
Target:  5'- cGGAGGCGGCGGauccggcgcgcccGGucucGGCCGcggACUCGGc -3'
miRNA:   3'- uCUUCUGCUGCU-------------UCu---CUGGC---UGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 180819 0.66 0.997451
Target:  5'- cGGAcucuGGGCGGgGAGGAGcCCGGCgUCa- -3'
miRNA:   3'- -UCU----UCUGCUgCUUCUCuGGCUG-AGcc -5'
10817 3' -51.6 NC_002794.1 + 179935 0.66 0.997451
Target:  5'- cGAAGACGACGucGcGGGCCGGggagCGa -3'
miRNA:   3'- uCUUCUGCUGCuuC-UCUGGCUga--GCc -5'
10817 3' -51.6 NC_002794.1 + 179440 0.67 0.993649
Target:  5'- cGGAGGCGugGAcc--ACCGcCUCGGu -3'
miRNA:   3'- uCUUCUGCugCUucucUGGCuGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 178795 0.82 0.442303
Target:  5'- gGGAAGGCGGCucggcccGggGGGACCGggcACUCGGg -3'
miRNA:   3'- -UCUUCUGCUG-------CuuCUCUGGC---UGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 178236 0.74 0.843478
Target:  5'- cGGAugGGACGACGAGGccgucgagggaagcGGGCUGAC-CGGa -3'
miRNA:   3'- -UCU--UCUGCUGCUUC--------------UCUGGCUGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 177908 0.66 0.996485
Target:  5'- cGGuuuauCGGgGAGGAGGgUGGCUCGGg -3'
miRNA:   3'- -UCuucu-GCUgCUUCUCUgGCUGAGCC- -5'
10817 3' -51.6 NC_002794.1 + 177615 0.66 0.997322
Target:  5'- cGGucGAucgcuccuCGACGAcGAGGCCGACcagcguccuggaaaUCGGa -3'
miRNA:   3'- -UCuuCU--------GCUGCUuCUCUGGCUG--------------AGCC- -5'
10817 3' -51.6 NC_002794.1 + 159946 0.69 0.980644
Target:  5'- cAGAgcGGuuuuCGACGAAGGucGACCGACgUCGa -3'
miRNA:   3'- -UCU--UCu---GCUGCUUCU--CUGGCUG-AGCc -5'
10817 3' -51.6 NC_002794.1 + 159660 0.66 0.997
Target:  5'- aAGGAGGCGACGAucuGuACCGAUaCGu -3'
miRNA:   3'- -UCUUCUGCUGCUucuC-UGGCUGaGCc -5'
10817 3' -51.6 NC_002794.1 + 159265 0.69 0.980644
Target:  5'- -uAAGAuCGACGuuGuGACUGACUCGa -3'
miRNA:   3'- ucUUCU-GCUGCuuCuCUGGCUGAGCc -5'
10817 3' -51.6 NC_002794.1 + 156814 0.66 0.997844
Target:  5'- gGGuAGGCGACGugccaaguAGGcACCGAC-CGGg -3'
miRNA:   3'- -UCuUCUGCUGCu-------UCUcUGGCUGaGCC- -5'
10817 3' -51.6 NC_002794.1 + 156475 0.68 0.986238
Target:  5'- cGGggGACGACGggGcGGCUuuAC-CGGu -3'
miRNA:   3'- -UCuuCUGCUGCuuCuCUGGc-UGaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.