miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 5' -54.7 NC_002794.1 + 130410 0.66 0.973217
Target:  5'- cGCCG-CGACcaugUUCCACAUCg--GCCg -3'
miRNA:   3'- aCGGCuGCUGa---GGGGUGUAGaagUGG- -5'
10817 5' -54.7 NC_002794.1 + 192681 0.66 0.973217
Target:  5'- cGCCGGCcGCcgUCgUACGUCUUCAgCa -3'
miRNA:   3'- aCGGCUGcUGa-GGgGUGUAGAAGUgG- -5'
10817 5' -54.7 NC_002794.1 + 193939 0.66 0.973217
Target:  5'- cGCCGGCucCggCCCCGCcgCcacCGCCg -3'
miRNA:   3'- aCGGCUGcuGa-GGGGUGuaGaa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 61530 0.66 0.973217
Target:  5'- cGCCGGCGGC-CgCCGCGaagaCgaCGCCg -3'
miRNA:   3'- aCGGCUGCUGaGgGGUGUa---GaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 99107 0.66 0.973217
Target:  5'- gUGCCGuGCGGCagCCCCugGauuUCUUUuucCCg -3'
miRNA:   3'- -ACGGC-UGCUGa-GGGGugU---AGAAGu--GG- -5'
10817 5' -54.7 NC_002794.1 + 63803 0.66 0.973217
Target:  5'- cG-CGACGACgUCCCGCAccgaCUUCGCg -3'
miRNA:   3'- aCgGCUGCUGaGGGGUGUa---GAAGUGg -5'
10817 5' -54.7 NC_002794.1 + 107781 0.66 0.973217
Target:  5'- cGcCCGGCGACga-CCGCGUCcgCGCg -3'
miRNA:   3'- aC-GGCUGCUGaggGGUGUAGaaGUGg -5'
10817 5' -54.7 NC_002794.1 + 83166 0.66 0.97295
Target:  5'- cUGCgGACG-CUCUCggucgagCGCggCUUCGCCa -3'
miRNA:   3'- -ACGgCUGCuGAGGG-------GUGuaGAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 80490 0.66 0.970463
Target:  5'- aGCUGGCGcAC-CaCCggCACGUCUUCugCg -3'
miRNA:   3'- aCGGCUGC-UGaG-GG--GUGUAGAAGugG- -5'
10817 5' -54.7 NC_002794.1 + 49292 0.66 0.970463
Target:  5'- cGCCGcCGcCUCCCC--GUCccgCACCc -3'
miRNA:   3'- aCGGCuGCuGAGGGGugUAGaa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 111616 0.66 0.970463
Target:  5'- gGCCGGCGGggCCgCCGCGgc--CGCCg -3'
miRNA:   3'- aCGGCUGCUgaGG-GGUGUagaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 65904 0.66 0.970463
Target:  5'- cGUCGACGAC-CUUgAcCGUCgUCGCCg -3'
miRNA:   3'- aCGGCUGCUGaGGGgU-GUAGaAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 61829 0.66 0.970463
Target:  5'- cGCCGGCGGCcggcgucaCUCCGC-UCcgCGCCc -3'
miRNA:   3'- aCGGCUGCUGa-------GGGGUGuAGaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 12592 0.66 0.970463
Target:  5'- cGCCuGCG--UCCCCACG-CUgCGCCa -3'
miRNA:   3'- aCGGcUGCugAGGGGUGUaGAaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 193981 0.66 0.970463
Target:  5'- cGCCG-CGGCcgcuaccgccgCCCC-CggCUUCGCCu -3'
miRNA:   3'- aCGGCuGCUGa----------GGGGuGuaGAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 124831 0.66 0.970463
Target:  5'- cUGUCGGCGACcaUCUgcauggcggCCGCcgaCUUCACCa -3'
miRNA:   3'- -ACGGCUGCUG--AGG---------GGUGua-GAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 93453 0.66 0.967511
Target:  5'- aGCuCGACGGCgUCCCGCcgCcgCACg -3'
miRNA:   3'- aCG-GCUGCUGaGGGGUGuaGaaGUGg -5'
10817 5' -54.7 NC_002794.1 + 190529 0.66 0.967511
Target:  5'- gUGCCGAuCGuCgUCCaccagcgguCCGCGUCcgUCGCCg -3'
miRNA:   3'- -ACGGCU-GCuG-AGG---------GGUGUAGa-AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 12178 0.66 0.967511
Target:  5'- cGCCGcCGACgCCgCCGCGgccgggCGCCg -3'
miRNA:   3'- aCGGCuGCUGaGG-GGUGUagaa--GUGG- -5'
10817 5' -54.7 NC_002794.1 + 18756 0.66 0.967511
Target:  5'- gGCCGgcggcaACGACUCUcuagCCACGaCcgUCGCCa -3'
miRNA:   3'- aCGGC------UGCUGAGG----GGUGUaGa-AGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.