Results 1 - 20 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10817 | 5' | -54.7 | NC_002794.1 | + | 64935 | 1.11 | 0.004033 |
Target: 5'- cUGCCGACGACUCCCCACAUCUUCACCc -3' miRNA: 3'- -ACGGCUGCUGAGGGGUGUAGAAGUGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 110545 | 0.8 | 0.362884 |
Target: 5'- cGgCGACGACgugCUCCGCGUCgUCGCCg -3' miRNA: 3'- aCgGCUGCUGa--GGGGUGUAGaAGUGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 156228 | 0.79 | 0.378865 |
Target: 5'- cGCCGGCGGCUCCgCGCucGUCgugacUCGCCu -3' miRNA: 3'- aCGGCUGCUGAGGgGUG--UAGa----AGUGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 145819 | 0.75 | 0.611294 |
Target: 5'- cGCCGGCGGCgagCCgagCGCGUCgacggUCGCCa -3' miRNA: 3'- aCGGCUGCUGa--GGg--GUGUAGa----AGUGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 16939 | 0.75 | 0.611294 |
Target: 5'- cGCCGAgccgccacCGcCUCCCCACGcccUCUcgUCGCCg -3' miRNA: 3'- aCGGCU--------GCuGAGGGGUGU---AGA--AGUGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 31243 | 0.74 | 0.651608 |
Target: 5'- aGCCGAUGACgcagaUCCGCAUCUUggaguugaCGCCg -3' miRNA: 3'- aCGGCUGCUGag---GGGUGUAGAA--------GUGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 26096 | 0.74 | 0.651608 |
Target: 5'- cGCCGACGGC-CCCgGCGa--UCGCCg -3' miRNA: 3'- aCGGCUGCUGaGGGgUGUagaAGUGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 77803 | 0.74 | 0.661669 |
Target: 5'- aGCCGGagcaaccGCUCgCCCAgauCAUCUUCACCg -3' miRNA: 3'- aCGGCUgc-----UGAG-GGGU---GUAGAAGUGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 46243 | 0.73 | 0.691679 |
Target: 5'- cGCCGGCGGCUCgUCCGCuUCcUCggGCCg -3' miRNA: 3'- aCGGCUGCUGAG-GGGUGuAGaAG--UGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 194029 | 0.73 | 0.691679 |
Target: 5'- cGCCGGCGcCUCgCCCGCcgCcgcCGCCg -3' miRNA: 3'- aCGGCUGCuGAG-GGGUGuaGaa-GUGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 131285 | 0.73 | 0.681713 |
Target: 5'- cGCCGGCGccgucGCUCCgCCGCccgugGUCgUCACCu -3' miRNA: 3'- aCGGCUGC-----UGAGG-GGUG-----UAGaAGUGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 136225 | 0.73 | 0.698627 |
Target: 5'- aGCCGACGAUacgugUCCCGCGUCUcggggacuugcgugUaCACCa -3' miRNA: 3'- aCGGCUGCUGa----GGGGUGUAGA--------------A-GUGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 55415 | 0.73 | 0.681713 |
Target: 5'- gGCCGagGCGAC-CCCgGCGUCcgcgUCGCCc -3' miRNA: 3'- aCGGC--UGCUGaGGGgUGUAGa---AGUGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 12427 | 0.73 | 0.681713 |
Target: 5'- cGCCGACuGGCagcugUCCCGCGUCagCGCCc -3' miRNA: 3'- aCGGCUG-CUGa----GGGGUGUAGaaGUGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 16533 | 0.73 | 0.711459 |
Target: 5'- cGCCGucccCGGCgUCCCCGgCGUCgcCACCg -3' miRNA: 3'- aCGGCu---GCUG-AGGGGU-GUAGaaGUGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 39803 | 0.73 | 0.681713 |
Target: 5'- cGCCGAcCGuuuUUCgCCCGCAUC-UCACCc -3' miRNA: 3'- aCGGCU-GCu--GAG-GGGUGUAGaAGUGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 98997 | 0.73 | 0.711459 |
Target: 5'- gGUCGGCGGCUUCgUcaGCuUCUUCACCa -3' miRNA: 3'- aCGGCUGCUGAGGgG--UGuAGAAGUGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 102043 | 0.73 | 0.701597 |
Target: 5'- aGCCGGCG-UUCCUCGCGcgcuUCUUCgaGCCg -3' miRNA: 3'- aCGGCUGCuGAGGGGUGU----AGAAG--UGG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 36546 | 0.72 | 0.740615 |
Target: 5'- gUGCCG-CGACUCCUC-CGUCcgCugCa -3' miRNA: 3'- -ACGGCuGCUGAGGGGuGUAGaaGugG- -5' |
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10817 | 5' | -54.7 | NC_002794.1 | + | 134421 | 0.72 | 0.730977 |
Target: 5'- cGCCGGCguuGugUCCCCACAUCa----- -3' miRNA: 3'- aCGGCUG---CugAGGGGUGUAGaagugg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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