miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 5' -54.7 NC_002794.1 + 64935 1.11 0.004033
Target:  5'- cUGCCGACGACUCCCCACAUCUUCACCc -3'
miRNA:   3'- -ACGGCUGCUGAGGGGUGUAGAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 110545 0.8 0.362884
Target:  5'- cGgCGACGACgugCUCCGCGUCgUCGCCg -3'
miRNA:   3'- aCgGCUGCUGa--GGGGUGUAGaAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 156228 0.79 0.378865
Target:  5'- cGCCGGCGGCUCCgCGCucGUCgugacUCGCCu -3'
miRNA:   3'- aCGGCUGCUGAGGgGUG--UAGa----AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 16939 0.75 0.611294
Target:  5'- cGCCGAgccgccacCGcCUCCCCACGcccUCUcgUCGCCg -3'
miRNA:   3'- aCGGCU--------GCuGAGGGGUGU---AGA--AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 145819 0.75 0.611294
Target:  5'- cGCCGGCGGCgagCCgagCGCGUCgacggUCGCCa -3'
miRNA:   3'- aCGGCUGCUGa--GGg--GUGUAGa----AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 26096 0.74 0.651608
Target:  5'- cGCCGACGGC-CCCgGCGa--UCGCCg -3'
miRNA:   3'- aCGGCUGCUGaGGGgUGUagaAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 31243 0.74 0.651608
Target:  5'- aGCCGAUGACgcagaUCCGCAUCUUggaguugaCGCCg -3'
miRNA:   3'- aCGGCUGCUGag---GGGUGUAGAA--------GUGG- -5'
10817 5' -54.7 NC_002794.1 + 77803 0.74 0.661669
Target:  5'- aGCCGGagcaaccGCUCgCCCAgauCAUCUUCACCg -3'
miRNA:   3'- aCGGCUgc-----UGAG-GGGU---GUAGAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 39803 0.73 0.681713
Target:  5'- cGCCGAcCGuuuUUCgCCCGCAUC-UCACCc -3'
miRNA:   3'- aCGGCU-GCu--GAG-GGGUGUAGaAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 55415 0.73 0.681713
Target:  5'- gGCCGagGCGAC-CCCgGCGUCcgcgUCGCCc -3'
miRNA:   3'- aCGGC--UGCUGaGGGgUGUAGa---AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 131285 0.73 0.681713
Target:  5'- cGCCGGCGccgucGCUCCgCCGCccgugGUCgUCACCu -3'
miRNA:   3'- aCGGCUGC-----UGAGG-GGUG-----UAGaAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 12427 0.73 0.681713
Target:  5'- cGCCGACuGGCagcugUCCCGCGUCagCGCCc -3'
miRNA:   3'- aCGGCUG-CUGa----GGGGUGUAGaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 194029 0.73 0.691679
Target:  5'- cGCCGGCGcCUCgCCCGCcgCcgcCGCCg -3'
miRNA:   3'- aCGGCUGCuGAG-GGGUGuaGaa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 46243 0.73 0.691679
Target:  5'- cGCCGGCGGCUCgUCCGCuUCcUCggGCCg -3'
miRNA:   3'- aCGGCUGCUGAG-GGGUGuAGaAG--UGG- -5'
10817 5' -54.7 NC_002794.1 + 136225 0.73 0.698627
Target:  5'- aGCCGACGAUacgugUCCCGCGUCUcggggacuugcgugUaCACCa -3'
miRNA:   3'- aCGGCUGCUGa----GGGGUGUAGA--------------A-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 102043 0.73 0.701597
Target:  5'- aGCCGGCG-UUCCUCGCGcgcuUCUUCgaGCCg -3'
miRNA:   3'- aCGGCUGCuGAGGGGUGU----AGAAG--UGG- -5'
10817 5' -54.7 NC_002794.1 + 16533 0.73 0.711459
Target:  5'- cGCCGucccCGGCgUCCCCGgCGUCgcCACCg -3'
miRNA:   3'- aCGGCu---GCUG-AGGGGU-GUAGaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 98997 0.73 0.711459
Target:  5'- gGUCGGCGGCUUCgUcaGCuUCUUCACCa -3'
miRNA:   3'- aCGGCUGCUGAGGgG--UGuAGAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 20216 0.72 0.730977
Target:  5'- cGCCGACcgccauGGCUCUCCGCGcCUggaugcUCGCCa -3'
miRNA:   3'- aCGGCUG------CUGAGGGGUGUaGA------AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 134421 0.72 0.730977
Target:  5'- cGCCGGCguuGugUCCCCACAUCa----- -3'
miRNA:   3'- aCGGCUG---CugAGGGGUGUAGaagugg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.