miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 5' -54.7 NC_002794.1 + 13448 0.72 0.740615
Target:  5'- cGaCGACGACUcCCCCGCucgcUCUggcCACCg -3'
miRNA:   3'- aCgGCUGCUGA-GGGGUGu---AGAa--GUGG- -5'
10817 5' -54.7 NC_002794.1 + 36546 0.72 0.740615
Target:  5'- gUGCCG-CGACUCCUC-CGUCcgCugCa -3'
miRNA:   3'- -ACGGCuGCUGAGGGGuGUAGaaGugG- -5'
10817 5' -54.7 NC_002794.1 + 107298 0.72 0.740615
Target:  5'- cGUCGACG-CUCCUCGCGggggCGCCg -3'
miRNA:   3'- aCGGCUGCuGAGGGGUGUagaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 125762 0.72 0.750162
Target:  5'- gGCCGGCGGCUCgCCACccggCUgcgagCGCUc -3'
miRNA:   3'- aCGGCUGCUGAGgGGUGua--GAa----GUGG- -5'
10817 5' -54.7 NC_002794.1 + 13126 0.72 0.759609
Target:  5'- cGCCGcGCGGCUCgCUCGCgcggGUCgUCGCCg -3'
miRNA:   3'- aCGGC-UGCUGAG-GGGUG----UAGaAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 194167 0.72 0.759609
Target:  5'- cUGCCGGCGcgccuuCUCCguCCGCAcgUUCACCg -3'
miRNA:   3'- -ACGGCUGCu-----GAGG--GGUGUagAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 78242 0.72 0.759609
Target:  5'- aGCCaGACGGCUCCaCGC-UCgacUCGCCg -3'
miRNA:   3'- aCGG-CUGCUGAGGgGUGuAGa--AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 181769 0.72 0.768945
Target:  5'- cGCCGAUGGCgccgcgCCgCCGCGUCUcguUCggGCCu -3'
miRNA:   3'- aCGGCUGCUGa-----GG-GGUGUAGA---AG--UGG- -5'
10817 5' -54.7 NC_002794.1 + 79038 0.72 0.768945
Target:  5'- cUGCCGGCccggccGCUCCCgCGCucgcUCUUCACUc -3'
miRNA:   3'- -ACGGCUGc-----UGAGGG-GUGu---AGAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 36113 0.72 0.778163
Target:  5'- aGCCGAUGAgaUCCCGgAUCgccCGCCg -3'
miRNA:   3'- aCGGCUGCUgaGGGGUgUAGaa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 178548 0.71 0.787255
Target:  5'- cUGCCGAUcgGGCa--CCACGUCUUCACg -3'
miRNA:   3'- -ACGGCUG--CUGaggGGUGUAGAAGUGg -5'
10817 5' -54.7 NC_002794.1 + 85055 0.71 0.796211
Target:  5'- cGCuCGACGACcggCCacgCCGCGUCUgCGCCc -3'
miRNA:   3'- aCG-GCUGCUGa--GG---GGUGUAGAaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 69074 0.71 0.796211
Target:  5'- cGCCGGCcgccCUCCUC-CGUCcUCACCg -3'
miRNA:   3'- aCGGCUGcu--GAGGGGuGUAGaAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 106843 0.71 0.796211
Target:  5'- gGCCuGCGGCUCCgCCuacaACAUCgagcucgUCGCCu -3'
miRNA:   3'- aCGGcUGCUGAGG-GG----UGUAGa------AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 73991 0.71 0.805023
Target:  5'- cGCuaCGACGACcuggUCCCCACG-CUgCGCCu -3'
miRNA:   3'- aCG--GCUGCUG----AGGGGUGUaGAaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 13824 0.71 0.812824
Target:  5'- cGgCGACGGCcuccuccuccuccUCCCCACcgCcucgUCGCCg -3'
miRNA:   3'- aCgGCUGCUG-------------AGGGGUGuaGa---AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 40135 0.71 0.822183
Target:  5'- aGCC-ACgGGCUCUCCGCggCUUCugCg -3'
miRNA:   3'- aCGGcUG-CUGAGGGGUGuaGAAGugG- -5'
10817 5' -54.7 NC_002794.1 + 78411 0.7 0.830515
Target:  5'- cGCCG-CGACUCUCCGCuccCggcgUCACg -3'
miRNA:   3'- aCGGCuGCUGAGGGGUGua-Ga---AGUGg -5'
10817 5' -54.7 NC_002794.1 + 104009 0.7 0.830515
Target:  5'- cGCCGGCGGaacgCCuCCGCAgcgagCgUUCGCCg -3'
miRNA:   3'- aCGGCUGCUga--GG-GGUGUa----G-AAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 133161 0.7 0.830515
Target:  5'- cGCCGACGACgugacucgCUCgACgAUCcggUCACCa -3'
miRNA:   3'- aCGGCUGCUGa-------GGGgUG-UAGa--AGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.