miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 5' -54.7 NC_002794.1 + 12178 0.66 0.967511
Target:  5'- cGCCGcCGACgCCgCCGCGgccgggCGCCg -3'
miRNA:   3'- aCGGCuGCUGaGG-GGUGUagaa--GUGG- -5'
10817 5' -54.7 NC_002794.1 + 190529 0.66 0.967511
Target:  5'- gUGCCGAuCGuCgUCCaccagcgguCCGCGUCcgUCGCCg -3'
miRNA:   3'- -ACGGCU-GCuG-AGG---------GGUGUAGa-AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 93453 0.66 0.967511
Target:  5'- aGCuCGACGGCgUCCCGCcgCcgCACg -3'
miRNA:   3'- aCG-GCUGCUGaGGGGUGuaGaaGUGg -5'
10817 5' -54.7 NC_002794.1 + 83901 0.66 0.967511
Target:  5'- cGcCCGACGAg-CCCgGCAcCcUCGCCg -3'
miRNA:   3'- aC-GGCUGCUgaGGGgUGUaGaAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 20637 0.66 0.965644
Target:  5'- cUGCCucGACGGCUggugcgagcaaggggUCCUGCugcucaacucgGUCUUCACCg -3'
miRNA:   3'- -ACGG--CUGCUGA---------------GGGGUG-----------UAGAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 143123 0.66 0.965644
Target:  5'- gGCCGugGcgcaggucucgggccACUCCCCGCGgaaguacgCggugaagCGCCa -3'
miRNA:   3'- aCGGCugC---------------UGAGGGGUGUa-------Gaa-----GUGG- -5'
10817 5' -54.7 NC_002794.1 + 190159 0.66 0.964357
Target:  5'- cUGgCGGCGGCUCuccucgaacaCCCGCcgCgcCACCu -3'
miRNA:   3'- -ACgGCUGCUGAG----------GGGUGuaGaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 134325 0.66 0.964357
Target:  5'- cGCCGGau-CUCCCgAC--CUUCGCCc -3'
miRNA:   3'- aCGGCUgcuGAGGGgUGuaGAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 187523 0.66 0.964357
Target:  5'- cGCgGAgGaACUCCCCGCcgCcgcgacCGCCg -3'
miRNA:   3'- aCGgCUgC-UGAGGGGUGuaGaa----GUGG- -5'
10817 5' -54.7 NC_002794.1 + 68630 0.66 0.964357
Target:  5'- -aUCGAgGACUa-CCGCAcCUUCACCg -3'
miRNA:   3'- acGGCUgCUGAggGGUGUaGAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 193378 0.66 0.964357
Target:  5'- gGCCG-CG-CUCCUCGcCGUCgucCGCCu -3'
miRNA:   3'- aCGGCuGCuGAGGGGU-GUAGaa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 74531 0.66 0.964357
Target:  5'- -cCCGACGACgUCCCgCACGcCgUCAUCc -3'
miRNA:   3'- acGGCUGCUG-AGGG-GUGUaGaAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 19263 0.66 0.960995
Target:  5'- gGCCG-CGGC-CCCCguggcGCGUCUccUgGCCu -3'
miRNA:   3'- aCGGCuGCUGaGGGG-----UGUAGA--AgUGG- -5'
10817 5' -54.7 NC_002794.1 + 39355 0.66 0.960995
Target:  5'- cGCUG--GGCUUCgCCACcaugGUCUUCGCCa -3'
miRNA:   3'- aCGGCugCUGAGG-GGUG----UAGAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 186941 0.66 0.960995
Target:  5'- cGCCGccACGGC-CCCCggGCcgCUggcCGCCg -3'
miRNA:   3'- aCGGC--UGCUGaGGGG--UGuaGAa--GUGG- -5'
10817 5' -54.7 NC_002794.1 + 62991 0.66 0.960995
Target:  5'- cGCCGGCGcCUggcacCCCCGCAcguggCUggagcuggugcUCGCCu -3'
miRNA:   3'- aCGGCUGCuGA-----GGGGUGUa----GA-----------AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 135472 0.66 0.960995
Target:  5'- gGCCGACGACgacgCCgC-CGUCgaCGCg -3'
miRNA:   3'- aCGGCUGCUGa---GGgGuGUAGaaGUGg -5'
10817 5' -54.7 NC_002794.1 + 11654 0.66 0.960995
Target:  5'- gGCCGACGACgcggCCCgccggccacaACAUCU-C-CCa -3'
miRNA:   3'- aCGGCUGCUGa---GGGg---------UGUAGAaGuGG- -5'
10817 5' -54.7 NC_002794.1 + 141309 0.67 0.957419
Target:  5'- cGCCGGCGACggcaCCgGCGUCggcUCGgUg -3'
miRNA:   3'- aCGGCUGCUGag--GGgUGUAGa--AGUgG- -5'
10817 5' -54.7 NC_002794.1 + 49619 0.67 0.957419
Target:  5'- cGCCGGCGGCgCCUCGCc----CGCCc -3'
miRNA:   3'- aCGGCUGCUGaGGGGUGuagaaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.