miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 5' -54.7 NC_002794.1 + 49619 0.67 0.957419
Target:  5'- cGCCGGCGGCgCCUCGCc----CGCCc -3'
miRNA:   3'- aCGGCUGCUGaGGGGUGuagaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 141309 0.67 0.957419
Target:  5'- cGCCGGCGACggcaCCgGCGUCggcUCGgUg -3'
miRNA:   3'- aCGGCUGCUGag--GGgUGUAGa--AGUgG- -5'
10817 5' -54.7 NC_002794.1 + 60644 0.67 0.957419
Target:  5'- cGCCGGCGGCgCCggCCACccggCgcgCGCCg -3'
miRNA:   3'- aCGGCUGCUGaGG--GGUGua--Gaa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 182705 0.67 0.953625
Target:  5'- cGUC-ACGuACUCCCC-CGUCUUCuuguggcucuGCCg -3'
miRNA:   3'- aCGGcUGC-UGAGGGGuGUAGAAG----------UGG- -5'
10817 5' -54.7 NC_002794.1 + 147473 0.67 0.953625
Target:  5'- cGCgCGACGACUCgCUguucgagcugGCcgagagCUUCACCg -3'
miRNA:   3'- aCG-GCUGCUGAGgGG----------UGua----GAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 69133 0.67 0.953625
Target:  5'- cGCCGACcGCcggCCaaGCcgCUUCGCCc -3'
miRNA:   3'- aCGGCUGcUGa--GGggUGuaGAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 65744 0.67 0.953625
Target:  5'- gGCCucCGACggCCCCGCGcCgcCGCCg -3'
miRNA:   3'- aCGGcuGCUGa-GGGGUGUaGaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 118689 0.67 0.953625
Target:  5'- cGCCGGCGGCagcgCCCaggagCGCAUgaUgGCCa -3'
miRNA:   3'- aCGGCUGCUGa---GGG-----GUGUAgaAgUGG- -5'
10817 5' -54.7 NC_002794.1 + 106945 0.67 0.953234
Target:  5'- gGCCGGCGGCgCCUggagacaCGCGUCgccUCGCg -3'
miRNA:   3'- aCGGCUGCUGaGGG-------GUGUAGa--AGUGg -5'
10817 5' -54.7 NC_002794.1 + 58505 0.67 0.952046
Target:  5'- cUGCuCGACGuGCUCgUCCACGggcacgccgaggcCUUCGCCg -3'
miRNA:   3'- -ACG-GCUGC-UGAG-GGGUGUa------------GAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 80798 0.67 0.94961
Target:  5'- cGCCG-CGuGCUCCuCCACGcccggcgugagcUCUUCcCCg -3'
miRNA:   3'- aCGGCuGC-UGAGG-GGUGU------------AGAAGuGG- -5'
10817 5' -54.7 NC_002794.1 + 77968 0.67 0.94961
Target:  5'- cGCCGAgcCGACUCCuCCGCcUCggaACg -3'
miRNA:   3'- aCGGCU--GCUGAGG-GGUGuAGaagUGg -5'
10817 5' -54.7 NC_002794.1 + 74134 0.67 0.94961
Target:  5'- cGCCGcCGuCUCCCUggucgacaGCAUC--CACCa -3'
miRNA:   3'- aCGGCuGCuGAGGGG--------UGUAGaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 68954 0.67 0.94961
Target:  5'- cGCCGGCGccuCUCCCUccuccgcggGCcgCgaCGCCg -3'
miRNA:   3'- aCGGCUGCu--GAGGGG---------UGuaGaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 32656 0.67 0.94961
Target:  5'- gGgCGACGGCgccgUCCCCGuCGUC--CGCCa -3'
miRNA:   3'- aCgGCUGCUG----AGGGGU-GUAGaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 83774 0.67 0.94961
Target:  5'- cGaCGACGACgccgCCgCCGCGUC--CGCCg -3'
miRNA:   3'- aCgGCUGCUGa---GG-GGUGUAGaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 195633 0.67 0.94961
Target:  5'- gGCCGGCGACgacgagCCgCACGcacUCGCC -3'
miRNA:   3'- aCGGCUGCUGa-----GGgGUGUagaAGUGG -5'
10817 5' -54.7 NC_002794.1 + 140976 0.67 0.94961
Target:  5'- gGCCGAgCGGaa--CCACggCUUCGCCg -3'
miRNA:   3'- aCGGCU-GCUgaggGGUGuaGAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 182037 0.67 0.94961
Target:  5'- cGCCGGCGACcagaccaggUCCUgCGCGUagggCGCCu -3'
miRNA:   3'- aCGGCUGCUG---------AGGG-GUGUAgaa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 184930 0.67 0.94961
Target:  5'- aGCCGGCGGuCgUCCugCCGCAgCUgCGCCg -3'
miRNA:   3'- aCGGCUGCU-G-AGG--GGUGUaGAaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.