miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 5' -54.7 NC_002794.1 + 335 0.67 0.945371
Target:  5'- cGCCGcCGACagCCCGCGcgacggcagaUUUUCACg -3'
miRNA:   3'- aCGGCuGCUGagGGGUGU----------AGAAGUGg -5'
10817 5' -54.7 NC_002794.1 + 903 0.68 0.926118
Target:  5'- gUGCCaACGccGCUCCCCGCGcCUUCu-- -3'
miRNA:   3'- -ACGGcUGC--UGAGGGGUGUaGAAGugg -5'
10817 5' -54.7 NC_002794.1 + 10319 0.7 0.838673
Target:  5'- -uCCGACGACUCggCCguCGUCggCGCCg -3'
miRNA:   3'- acGGCUGCUGAG--GGguGUAGaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 11654 0.66 0.960995
Target:  5'- gGCCGACGACgcggCCCgccggccacaACAUCU-C-CCa -3'
miRNA:   3'- aCGGCUGCUGa---GGGg---------UGUAGAaGuGG- -5'
10817 5' -54.7 NC_002794.1 + 11859 0.69 0.886294
Target:  5'- cGCCGGCGACgaccgcccgCCCCGCGacggguccUCgagcggguucgugcUCGCCg -3'
miRNA:   3'- aCGGCUGCUGa--------GGGGUGU--------AGa-------------AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 12178 0.66 0.967511
Target:  5'- cGCCGcCGACgCCgCCGCGgccgggCGCCg -3'
miRNA:   3'- aCGGCuGCUGaGG-GGUGUagaa--GUGG- -5'
10817 5' -54.7 NC_002794.1 + 12234 0.69 0.896854
Target:  5'- cGCCGGCGGCgCCguCCGCGg---CGCCg -3'
miRNA:   3'- aCGGCUGCUGaGG--GGUGUagaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 12427 0.73 0.681713
Target:  5'- cGCCGACuGGCagcugUCCCGCGUCagCGCCc -3'
miRNA:   3'- aCGGCUG-CUGa----GGGGUGUAGaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 12470 0.69 0.903164
Target:  5'- cUGcCCGACGAC-CgUCugAUCgUCACCu -3'
miRNA:   3'- -AC-GGCUGCUGaGgGGugUAGaAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 12592 0.66 0.970463
Target:  5'- cGCCuGCG--UCCCCACG-CUgCGCCa -3'
miRNA:   3'- aCGGcUGCugAGGGGUGUaGAaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 13126 0.72 0.759609
Target:  5'- cGCCGcGCGGCUCgCUCGCgcggGUCgUCGCCg -3'
miRNA:   3'- aCGGC-UGCUGAG-GGGUG----UAGaAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 13448 0.72 0.740615
Target:  5'- cGaCGACGACUcCCCCGCucgcUCUggcCACCg -3'
miRNA:   3'- aCgGCUGCUGA-GGGGUGu---AGAa--GUGG- -5'
10817 5' -54.7 NC_002794.1 + 13824 0.71 0.812824
Target:  5'- cGgCGACGGCcuccuccuccuccUCCCCACcgCcucgUCGCCg -3'
miRNA:   3'- aCgGCUGCUG-------------AGGGGUGuaGa---AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 14057 0.7 0.862024
Target:  5'- cGCCGACGGCgaUCCUgGCGgag-CGCCc -3'
miRNA:   3'- aCGGCUGCUG--AGGGgUGUagaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 15277 0.68 0.926118
Target:  5'- aGCCGcGCGGCUCCCUccGCGcgagcgacuacUCgcgCGCCc -3'
miRNA:   3'- aCGGC-UGCUGAGGGG--UGU-----------AGaa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 15690 0.67 0.94961
Target:  5'- gGUCGAaGACUaCCggugCCAguuCAUCUUCACCg -3'
miRNA:   3'- aCGGCUgCUGA-GG----GGU---GUAGAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 16533 0.73 0.711459
Target:  5'- cGCCGucccCGGCgUCCCCGgCGUCgcCACCg -3'
miRNA:   3'- aCGGCu---GCUG-AGGGGU-GUAGaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 16801 0.7 0.846648
Target:  5'- cGCCGACGACgCCCaGCcgCcccCGCCg -3'
miRNA:   3'- aCGGCUGCUGaGGGgUGuaGaa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 16939 0.75 0.611294
Target:  5'- cGCCGAgccgccacCGcCUCCCCACGcccUCUcgUCGCCg -3'
miRNA:   3'- aCGGCU--------GCuGAGGGGUGU---AGA--AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 17099 0.69 0.883566
Target:  5'- cGCCGACG-UUCCCgACGa--UCGCCu -3'
miRNA:   3'- aCGGCUGCuGAGGGgUGUagaAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.