miRNA display CGI


Results 21 - 40 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 5' -54.7 NC_002794.1 + 18143 0.7 0.869413
Target:  5'- -cCCGACGAUcgUCCCCACA----CACCu -3'
miRNA:   3'- acGGCUGCUG--AGGGGUGUagaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 18203 0.68 0.915102
Target:  5'- gGCCGACGcCUCCuaaCCGCcUCU-CACa -3'
miRNA:   3'- aCGGCUGCuGAGG---GGUGuAGAaGUGg -5'
10817 5' -54.7 NC_002794.1 + 18756 0.66 0.967511
Target:  5'- gGCCGgcggcaACGACUCUcuagCCACGaCcgUCGCCa -3'
miRNA:   3'- aCGGC------UGCUGAGG----GGUGUaGa-AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 19263 0.66 0.960995
Target:  5'- gGCCG-CGGC-CCCCguggcGCGUCUccUgGCCu -3'
miRNA:   3'- aCGGCuGCUGaGGGG-----UGUAGA--AgUGG- -5'
10817 5' -54.7 NC_002794.1 + 19328 0.69 0.896854
Target:  5'- cGCUGGCGAC-CCgCGCGcCggUCACCc -3'
miRNA:   3'- aCGGCUGCUGaGGgGUGUaGa-AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 20216 0.72 0.730977
Target:  5'- cGCCGACcgccauGGCUCUCCGCGcCUggaugcUCGCCa -3'
miRNA:   3'- aCGGCUG------CUGAGGGGUGUaGA------AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 20567 0.68 0.936206
Target:  5'- cGCCGuCG-CUCCgCaACAUCUUCAa- -3'
miRNA:   3'- aCGGCuGCuGAGGgG-UGUAGAAGUgg -5'
10817 5' -54.7 NC_002794.1 + 20637 0.66 0.965644
Target:  5'- cUGCCucGACGGCUggugcgagcaaggggUCCUGCugcucaacucgGUCUUCACCg -3'
miRNA:   3'- -ACGG--CUGCUGA---------------GGGGUG-----------UAGAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 21685 0.68 0.926118
Target:  5'- cGCCcgcucCGGCUCCCCGCcUCggCGuCCa -3'
miRNA:   3'- aCGGcu---GCUGAGGGGUGuAGaaGU-GG- -5'
10817 5' -54.7 NC_002794.1 + 22801 0.68 0.931278
Target:  5'- cGaCCGAccgcuCGACUCaCCguCGUCUUCGCg -3'
miRNA:   3'- aC-GGCU-----GCUGAG-GGguGUAGAAGUGg -5'
10817 5' -54.7 NC_002794.1 + 25845 0.67 0.945805
Target:  5'- aUGUCGACGACagccuacaaaaaaaCCCACGUCgUCucuCCa -3'
miRNA:   3'- -ACGGCUGCUGag------------GGGUGUAGaAGu--GG- -5'
10817 5' -54.7 NC_002794.1 + 26096 0.74 0.651608
Target:  5'- cGCCGACGGC-CCCgGCGa--UCGCCg -3'
miRNA:   3'- aCGGCUGCUGaGGGgUGUagaAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 30969 0.68 0.931278
Target:  5'- aUGUCguGACGGucCUCCCCggcgacggcgGgGUCUUCGCCg -3'
miRNA:   3'- -ACGG--CUGCU--GAGGGG----------UgUAGAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 31243 0.74 0.651608
Target:  5'- aGCCGAUGACgcagaUCCGCAUCUUggaguugaCGCCg -3'
miRNA:   3'- aCGGCUGCUGag---GGGUGUAGAA--------GUGG- -5'
10817 5' -54.7 NC_002794.1 + 31387 0.69 0.896854
Target:  5'- cGUCGuCGGCggCCCCGCcgCgccCGCCg -3'
miRNA:   3'- aCGGCuGCUGa-GGGGUGuaGaa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 32656 0.67 0.94961
Target:  5'- gGgCGACGGCgccgUCCCCGuCGUC--CGCCa -3'
miRNA:   3'- aCgGCUGCUG----AGGGGU-GUAGaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 36113 0.72 0.778163
Target:  5'- aGCCGAUGAgaUCCCGgAUCgccCGCCg -3'
miRNA:   3'- aCGGCUGCUgaGGGGUgUAGaa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 36546 0.72 0.740615
Target:  5'- gUGCCG-CGACUCCUC-CGUCcgCugCa -3'
miRNA:   3'- -ACGGCuGCUGAGGGGuGUAGaaGugG- -5'
10817 5' -54.7 NC_002794.1 + 38544 0.67 0.944495
Target:  5'- cGCCGcCGcCUCCCCGCcagaagccCGCCg -3'
miRNA:   3'- aCGGCuGCuGAGGGGUGuagaa---GUGG- -5'
10817 5' -54.7 NC_002794.1 + 39355 0.66 0.960995
Target:  5'- cGCUG--GGCUUCgCCACcaugGUCUUCGCCa -3'
miRNA:   3'- aCGGCugCUGAGG-GGUG----UAGAAGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.